Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRB79_RS01140 Genome accession   NZ_CP065511
Coordinates   228792..229301 (-) Length   169 a.a.
NCBI ID   WP_243506395.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223792..234301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS01120 (IRB79_01120) rplI 224868..225314 (-) 447 WP_243506392.1 50S ribosomal protein L9 -
  IRB79_RS01125 (IRB79_01125) - 225311..227284 (-) 1974 WP_243506393.1 DHH family phosphoesterase -
  IRB79_RS01130 (IRB79_01130) - 227316..228251 (-) 936 WP_243506394.1 YybS family protein -
  IRB79_RS01135 (IRB79_01135) rpsR 228495..228734 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  IRB79_RS01140 (IRB79_01140) ssbA 228792..229301 (-) 510 WP_243506395.1 single-stranded DNA-binding protein Machinery gene
  IRB79_RS01145 (IRB79_01145) rpsF 229339..229626 (-) 288 WP_009332474.1 30S ribosomal protein S6 -
  IRB79_RS01150 (IRB79_01150) ychF 230008..231108 (-) 1101 WP_221877179.1 redox-regulated ATPase YchF -
  IRB79_RS01155 (IRB79_01155) - 231235..233241 (-) 2007 WP_243506396.1 molybdopterin-dependent oxidoreductase -
  IRB79_RS01160 (IRB79_01160) - 233269..233466 (-) 198 WP_009332477.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18775.56 Da        Isoelectric Point: 4.7827

>NTDB_id=511463 IRB79_RS01140 WP_243506395.1 228792..229301(-) (ssbA) [Cytobacillus oceanisediminis strain N497-ZHONG]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGNPNYGGPRDQDFPFGNNSNQNQRQDIRNQGGYTRVDQDPFANDGQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=511463 IRB79_RS01140 WP_243506395.1 228792..229301(-) (ssbA) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTACGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTACTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGCAGTCTTGCAGGTGTAGATGGCCGGATTCAGTCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGTGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCAATC
AGAATCAACGCCAGGATATTCGTAATCAGGGCGGCTATACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAAATC
GACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.225

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

54.19

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.722

0.402