Detailed information NTG0511404

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STCNRZ1202_RS08605
• Genome accession: NZ_CP065506
• Coordinates: 1651825..1652253 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ1202
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1646825..1657253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ1202_RS08565 (STCNRZ1202_08570)	-	1646963..1647406 (-)	444	WP_002946118.1	hypothetical protein	-
STCNRZ1202_RS08570	-	1647480..1647905 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
STCNRZ1202_RS08575 (STCNRZ1202_08580)	-	1648148..1648345 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STCNRZ1202_RS08580 (STCNRZ1202_08585)	-	1648594..1649787 (-)	1194	WP_014608740.1	acetate kinase	-
STCNRZ1202_RS08585 (STCNRZ1202_08590)	comYH	1649843..1650799 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STCNRZ1202_RS08590 (STCNRZ1202_08595)	comGG	1650844..1651161 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STCNRZ1202_RS08595 (STCNRZ1202_08600)	comYF	1651139..1651576 (-)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
STCNRZ1202_RS08600 (STCNRZ1202_08605)	comGE	1651560..1651853 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STCNRZ1202_RS08605 (STCNRZ1202_08610)	comYD	1651825..1652253 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STCNRZ1202_RS08610 (STCNRZ1202_08615)	comYC	1652213..1652539 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STCNRZ1202_RS08615 (STCNRZ1202_08620)	comYB	1652536..1653636 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STCNRZ1202_RS08620 (STCNRZ1202_08625)	comGA/cglA/cilD	1653518..1654459 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STCNRZ1202_RS08625 (STCNRZ1202_08630)	-	1654540..1654902 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=511404 STCNRZ1202_RS08605 WP_011226626.1 1651825..1652253(-) (comYD) [Streptococcus thermophilus strain CNRZ1202]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=511404 STCNRZ1202_RS08605 WP_011226626.1 1651825..1652253(-) (comYD) [Streptococcus thermophilus strain CNRZ1202]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTATTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38