Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STT55_RS07010 Genome accession   NZ_CP065502
Coordinates   1343996..1345489 (-) Length   497 a.a.
NCBI ID   WP_002946410.1    Uniprot ID   Q5M3H4
Organism   Streptococcus thermophilus strain ST55     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338996..1350489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS06980 (STT55_06930) - 1339126..1339503 (+) 378 WP_173940604.1 GntR family transcriptional regulator -
  STT55_RS06985 (STT55_06935) - 1339508..1340206 (+) 699 WP_173940605.1 ABC transporter ATP-binding protein -
  STT55_RS06990 (STT55_06940) - 1340218..1341003 (+) 786 WP_173940606.1 ABC transporter permease -
  STT55_RS06995 (STT55_06945) amiF 1341053..1341982 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STT55_RS07000 (STT55_06950) amiE 1341975..1343060 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STT55_RS07005 (STT55_06955) amiD 1343070..1343996 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STT55_RS07010 (STT55_06960) amiC 1343996..1345489 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  STT55_RS07015 (STT55_06965) amiA 1345551..1347518 (-) 1968 WP_347229913.1 peptide ABC transporter substrate-binding protein Regulator
  STT55_RS07020 (STT55_06970) - 1347722..1347912 (-) 191 Protein_1329 IS3 family transposase -
  STT55_RS07025 (STT55_06975) amiF 1347903..1348073 (-) 171 WP_014608546.1 hypothetical protein Regulator
  STT55_RS07030 (STT55_06980) amiF 1348086..1348322 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein Regulator
  STT55_RS07035 (STT55_06985) - 1348302..1348662 (-) 361 Protein_1332 TatD family hydrolase -
  STT55_RS07040 (STT55_06990) - 1349011..1350216 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55751.62 Da        Isoelectric Point: 10.0618

>NTDB_id=511268 STT55_RS07010 WP_002946410.1 1343996..1345489(-) (amiC) [Streptococcus thermophilus strain ST55]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=511268 STT55_RS07010 WP_002946410.1 1343996..1345489(-) (amiC) [Streptococcus thermophilus strain ST55]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

100

100

1
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974