Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPAF_RS03590 Genome accession   NC_017905
Coordinates   693574..695541 (+) Length   655 a.a.
NCBI ID   WP_041826258.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 688574..700541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03560 (Spaf_0673) - 688723..689163 (+) 441 WP_041826257.1 ASCH domain-containing protein -
  SPAF_RS03565 (Spaf_0674) glmU 689526..690905 (+) 1380 WP_014713049.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  SPAF_RS03570 (Spaf_0675) - 690915..691460 (+) 546 WP_013903280.1 NUDIX hydrolase -
  SPAF_RS03575 (Spaf_0676) macP 691472..691807 (+) 336 WP_013903281.1 cell wall synthase accessory phosphoprotein MacP -
  SPAF_RS03580 (Spaf_0677) - 691832..692524 (+) 693 WP_041826528.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  SPAF_RS03585 (Spaf_0678) nth 692685..693308 (+) 624 WP_014713051.1 endonuclease III -
  SPAF_RS03590 (Spaf_0679) amiA3 693574..695541 (+) 1968 WP_041826258.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS03595 (Spaf_0680) - 695733..696119 (-) 387 WP_041826259.1 VOC family protein -
  SPAF_RS03600 (Spaf_0681) - 696131..696958 (-) 828 WP_041826260.1 exodeoxyribonuclease III -
  SPAF_RS03605 (Spaf_0682) - 697094..697546 (+) 453 WP_041826261.1 DUF3290 family protein -
  SPAF_RS03610 (Spaf_0683) - 697543..698175 (+) 633 WP_003014418.1 DUF421 domain-containing protein -
  SPAF_RS03615 (Spaf_0684) pbp2b 698316..700367 (+) 2052 WP_014713056.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72137.37 Da        Isoelectric Point: 5.3481

>NTDB_id=51126 SPAF_RS03590 WP_041826258.1 693574..695541(+) (amiA3) [Streptococcus parasanguinis FW213]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDVTSNLVDGLLENDQYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDYTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIQLVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFAFDRKSYAAQVSGADAAENTLRSTLVPPTYVQINGEDFGKVVEKQLVTYGDQWKGVNLDD
GQTSLYSPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWAPDYQDPSTYLESISPVNGSVSYYFGIDAGTNNPAIAAVGLDQYANMLKDADAELLDQAKRY
EKYAAAQAWLTDSAITLPTVSNGGSPMLQRTVPYSRAASWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=51126 SPAF_RS03590 WP_041826258.1 693574..695541(+) (amiA3) [Streptococcus parasanguinis FW213]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTCTTAGCAGCGTGTGGTGGTGGTAG
TAGCAATCAAGCAACCTACTCATTCGTCTATTCAGCGGATCCAAATACCTTGGATTACATCGCTGCAACTCGTACGACTA
CTTCAGATGTCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCAATACGGAAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTGACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACGAGTGAAGGAGA
AGAATATGGTGCTGTAACGGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCTAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTACGTAAAAGGGGAAACCAAAGACTTTAACACCGTTGGAGTCAAAGCC
TTAGACGACTACACCATCCAATATACTTTGGTTCGTCCCGAAAGCTTCTGGAACTCAAAAACAACCTCAGGTGTTCTTTT
CCCAGTCAATGCGGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCGTTGAAACCTAGCAGCATCTTATACAATGGTC
CTTATTACTTGAAATCATTGACTTCAAAATCTGAGATTCAATTGGTCAAGAACAAAGACTATTACGATGCGAAAAATGTT
CATATCGACAATGTCAAATTGACCTTTAATGATGGATCAAACCCAGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
TTCCTTTGCCTCTGTTATGCCAAACAGCTCGACATATAAGAGCGTCAAGAAAAACTTTGGCGACAACATTGTCTACGGTT
TGCAATTGGGAACATCCTACTACCTTGGATTCAACTTGGACCGTCAAAAATATGACCACACAGCTAAAACAACGGATGAA
CAAAAAGCCTCTACCAAGAAAGCAATCCTGAACAAGGACTTCCGTCAAGCGGTAAACTTTGCATTTGACCGTAAATCTTA
TGCAGCACAAGTATCCGGGGCTGATGCGGCTGAAAATACTCTTCGTAGTACCTTGGTGCCACCAACCTATGTCCAAATCA
ATGGAGAAGATTTTGGTAAAGTCGTTGAAAAACAATTGGTTACCTATGGAGACCAATGGAAGGGTGTGAATCTGGACGAT
GGTCAAACAAGCCTTTACAGCCCAGAAAAAGCCAAGGCTTCATTTGCGAAAGCTAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTATATTGTCAGCCAAGTGGACAACAGCATGGTCCAACAAGCTAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTCGTTGTGGACCTTCAAAAGGTTTCGGATGATGATTTCCAAAATATCACC
TATTTCAGTGATACAGCAGCTGCGAGAGATTACGATATCTCAGGCGGTGGTTGGGCCCCTGACTACCAAGATCCATCCAC
TTATCTCGAAAGTATCAGCCCAGTCAATGGTTCAGTTTCATACTATTTTGGTATAGATGCGGGAACAAACAACCCAGCCA
TTGCAGCAGTTGGTTTGGACCAATACGCCAACATGTTAAAAGATGCGGATGCTGAATTGTTGGATCAAGCAAAACGCTAC
GAAAAATATGCAGCAGCACAAGCTTGGTTGACGGATAGTGCGATTACGCTTCCAACTGTTTCAAATGGTGGTTCTCCAAT
GCTTCAACGGACCGTACCATACAGTCGTGCTGCTTCATGGGTTGGTACAAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCCAAAGATGTTGTCACAACCAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

53.04

100

0.533
  amiA3 Streptococcus thermophilus LMD-9

53.12

100

0.533
  amiA Streptococcus salivarius strain HSISS4

51.982

100

0.521

Multiple sequence alignment