Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SPAF_RS03490 Genome accession   NC_017905
Coordinates   677000..678964 (-) Length   654 a.a.
NCBI ID   WP_014713037.1    Uniprot ID   V8BF59
Organism   Streptococcus parasanguinis FW213     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 672000..683964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03475 (Spaf_0654) - 672997..673554 (+) 558 WP_014713034.1 hypothetical protein -
  SPAF_RS03480 (Spaf_0655) - 673881..674648 (+) 768 WP_014713035.1 ABC transporter ATP-binding protein -
  SPAF_RS03485 (Spaf_0656) - 674641..676644 (+) 2004 WP_014713036.1 FtsX-like permease family protein -
  SPAF_RS03490 (Spaf_0657) amiA 677000..678964 (-) 1965 WP_014713037.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS03495 (Spaf_0658) - 679224..679553 (+) 330 WP_023917534.1 PadR family transcriptional regulator -
  SPAF_RS03500 (Spaf_0659) - 679547..680347 (+) 801 WP_014713038.1 membrane protein -
  SPAF_RS03505 (Spaf_0660) - 680344..681174 (+) 831 WP_013903271.1 hypothetical protein -
  SPAF_RS03510 (Spaf_0661) - 681511..682902 (+) 1392 WP_013903272.1 amino acid permease -
  SPAF_RS03515 (Spaf_0662) - 683007..683243 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  SPAF_RS03520 (Spaf_0663) - 683236..683934 (+) 699 WP_013903273.1 3-oxoacyl-ACP reductase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72458.51 Da        Isoelectric Point: 5.0384

>NTDB_id=51125 SPAF_RS03490 WP_014713037.1 677000..678964(-) (amiA) [Streptococcus parasanguinis FW213]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAKDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPNGILYNGAYILKSFTSKSQIELEKNPEYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYTPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNNTKTALQNKNFRQALNFALDRTSYSAQVNGKDGASKTLRTLLVPPTFVQADGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKAELQSQGVQFPIHIDYVVDQSSNALVQQADSMKSSIEAALGKDNVVIDVQKLSTDDADN
ATYFAQSPEQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNQYKELLDAANAEKLDTNA
RYEKYAAAQAWLTENAIVLPIYSKGGVPSITKVTPFSAANSAIGIKGETSFFKYQKVQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=51125 SPAF_RS03490 WP_014713037.1 677000..678964(-) (amiA) [Streptococcus parasanguinis FW213]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTTGCCGCTGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAGGGAACAACCTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACTACCAACTTGGTCGATGGTTTGTTTGAAAACGACCAATACGGTAACCTAGTGCCTGCTCTT
GCTGAGGACTGGTCTGTTTCAAAAGACGGTCTGACTTATACCTACAAGCTTCGAAAAGACGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCAAAAGATTTCGTGACATCTCTGAAATATGTAGCAGATAAAAAATCTGATGCAC
TTTACTTGGTTCAAAACTCAGTCAAAGGCTTGGATGACTATGTAAACGGGAAAACCAAAGACTTCTCAACCGTTGGGGTA
AAAGCTGTTGATGATCACACTCTTCAATATACTTTGAACCAACCTGAATCTTTCTGGAATTCTAAATTGACGACTGCTAC
CATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGACTTTGGTAGCGTGAAACCAAATGGGATCCTCTACA
ACGGGGCCTACATTTTGAAGTCCTTCACTTCAAAATCACAAATCGAGTTGGAAAAGAACCCTGAATACTACGATAAGAAA
AATGTTCACATCGATACGGTTAAATTAACTTACTTCGATGGATCCGACCAAGACTATCTTGCTCGTAACTTCTCAGATGG
TAACCTATCTACTGCTCGTCTCTTCCCAACAAGCTCAACCTACAGTACGATTGAGAAGAAATTCAAGGATAACATCGTTT
ATACCCCACAAGATTCTACTGTTTACTACGCTTACTTCAACGTCAACCGTCAAAATTACGGCCATACCAAGAAGACATCT
GATGAGCAAAAGAACAACACGAAGACAGCCCTTCAAAACAAAAACTTCCGTCAAGCTTTGAACTTTGCTTTAGACAGAAC
TTCCTACAGCGCTCAAGTTAACGGGAAAGACGGAGCATCAAAAACTCTACGTACCCTTCTAGTTCCACCGACATTTGTGC
AAGCAGACGGGAAAGACTTCGGTACTCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTTAGCTTC
GCAGATGCTCAAGATAGCTTGCATAATGCGGATAAAGCCAAAGCAGAACTTGAAAAAGCGAAGGCTGAATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTATGTCGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGCTCAATCGAAGCAGCTCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCAGATAAC
GCTACTTACTTTGCCCAATCACCAGAGCAAAAAGACTTTGATATGGATATCACTGGTTGGGGACCTGACTTCCAAGACCC
ATCTACTTACTTGGATATCTTGAACCCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CGCTCATCGAAAAAATTGGTTTGAACCAATACAAAGAACTGTTGGATGCTGCCAATGCTGAAAAATTGGATACCAATGCA
CGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACAGAAAACGCCATTGTTCTTCCAATCTACTCTAAGGGTGGAGT
TCCATCTATCACGAAGGTGACGCCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGTGAAACAAGCTTCTTCAAAT
ACCAAAAAGTGCAAGACAAGACAGTCACAACGGCTGACTACGAAAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCGAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BF59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.535

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.235

100

0.557

Multiple sequence alignment