Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   STAVA116_RS07840 Genome accession   NZ_CP065498
Coordinates   1528513..1528698 (-) Length   61 a.a.
NCBI ID   WP_347229866.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1523513..1533698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS07815 (STAVA116_07770) tsaD 1523983..1524996 (-) 1014 WP_002951922.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  STAVA116_RS07820 (STAVA116_07775) rimI 1524996..1525409 (-) 414 WP_014621963.1 ribosomal protein S18-alanine N-acetyltransferase -
  STAVA116_RS07825 (STAVA116_07780) tsaB 1525411..1526097 (-) 687 WP_002947108.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  STAVA116_RS07830 (STAVA116_07785) - 1526360..1526590 (+) 231 WP_087010180.1 DNA-dependent RNA polymerase subunit epsilon -
  STAVA116_RS07835 (STAVA116_07790) - 1526595..1528277 (+) 1683 WP_011227561.1 ribonuclease J -
  STAVA116_RS07840 (STAVA116_07795) lytF 1528513..1528698 (-) 186 WP_347229866.1 hypothetical protein Regulator
  STAVA116_RS07845 (STAVA116_07800) glnA 1529010..1530353 (-) 1344 WP_011681641.1 type I glutamate--ammonia ligase -
  STAVA116_RS07850 (STAVA116_07805) - 1530402..1530776 (-) 375 WP_011681642.1 MerR family transcriptional regulator -
  STAVA116_RS07855 (STAVA116_07810) - 1530949..1531452 (-) 504 WP_087010181.1 aromatic acid exporter family protein -
  STAVA116_RS07860 (STAVA116_07815) - 1531697..1532499 (+) 803 Protein_1508 transposase -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6767.50 Da        Isoelectric Point: 4.5439

>NTDB_id=511156 STAVA116_RS07840 WP_347229866.1 1528513..1528698(-) (lytF) [Streptococcus thermophilus strain AVA116]
MELWNRYLVGQCTWGVKEITLWGSNWWCNGGDWAGSTASQGYAVGSISAARSIVYWTDGGY

Nucleotide


Download         Length: 186 bp        

>NTDB_id=511156 STAVA116_RS07840 WP_347229866.1 1528513..1528698(-) (lytF) [Streptococcus thermophilus strain AVA116]
GTGGAACTGTGGAATCGTTATCTAGTTGGTCAATGTACATGGGGTGTTAAAGAAATTACTCTATGGGGAAGTAACTGGTG
GTGTAATGGTGGCGATTGGGCAGGAAGCACTGCTAGCCAAGGCTATGCTGTTGGTTCGATATCTGCTGCTCGTTCGATTG
TATATTGGACTGATGGTGGATATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii str. Challis substr. CH1

54.386

93.443

0.508
  lytF Streptococcus gordonii strain NCTC7865

54.386

93.443

0.508
  SMU.836 Streptococcus mutans UA159

49.18

100

0.492