Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPAF_RS01970 Genome accession   NC_017905
Coordinates   371484..373460 (+) Length   658 a.a.
NCBI ID   WP_041826213.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 366484..378460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS01955 (Spaf_0358) - 368001..368669 (+) 669 WP_003014188.1 fructose-6-phosphate aldolase -
  SPAF_RS01960 (Spaf_0359) - 368685..369776 (+) 1092 WP_014712835.1 glycerol dehydrogenase -
  SPAF_RS01965 (Spaf_0361) - 369996..371318 (-) 1323 WP_014712836.1 DUF1958 domain-containing protein -
  SPAF_RS01970 (Spaf_0362) amiA3 371484..373460 (+) 1977 WP_041826213.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS01975 (Spaf_0363) leuS 373736..376237 (+) 2502 WP_014712838.1 leucine--tRNA ligase -
  SPAF_RS01980 (Spaf_0364) - 376433..377104 (+) 672 WP_014712839.1 DUF4352 domain-containing protein -
  SPAF_RS01985 (Spaf_0366) - 377435..377884 (+) 450 WP_003018359.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72686.66 Da        Isoelectric Point: 5.2840

>NTDB_id=51114 SPAF_RS01970 WP_041826213.1 371484..373460(+) (amiA3) [Streptococcus parasanguinis FW213]
MNKGKVLLATSALLLSAGVLAACSGGKSGSSGDQTFSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGEVKAQDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTSDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNEEFLKSKGDDYGQGTSPSSILYCGPYLIKSITSKSSATLEKNPTYWD
ADNVKIGKVKLTYYDGQDSESLIRGFDKGDYTVARVFPSGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQSYEITAK
TTDAQKTSTKKAILNKDFRQSIMFAFNRKAYVAQANGEAAANKVIRNTFTPPNFVQINGQQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSIESTLGAENIVIDLKMISDDDL
QRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYINITSGKSGENANAYFGFDAGTNNAAAKAAGFDEYDQLIEDAQKETT
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPGVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVSAKDYDKARDQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=51114 SPAF_RS01970 WP_041826213.1 371484..373460(+) (amiA3) [Streptococcus parasanguinis FW213]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTGGAAGTTCCGGAGATCAGACTTTTAGCTATGTCTATACCCAGGATCCGGATACTCTCGACTATTCGATTTCTAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTGATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGCAAAGGAGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCTCAAGACTTTGTCACAGGTCTCAAGCACGCGGCAGACAAGAAATCACAAG
CGATTTACTTGGTCCAAAAATCTGTCAAAGGTTTGGATGATTATGTTTCAGGGAAGACATCTGATTTCTCAACTGTTGGT
GTAAAAGCTATTGATGATTACACCGTTCAATATACTTTGAGTCAACCAGAAAGTTTCTGGAATTCTAAGACTACGATGGG
GATCTTGATGCCGGTCAACGAAGAATTCCTGAAATCTAAAGGAGATGACTATGGTCAAGGAACTTCTCCATCTAGTATCC
TGTACTGTGGTCCTTATTTGATCAAATCCATCACTTCTAAATCTTCTGCGACATTGGAAAAGAACCCAACATACTGGGAT
GCGGACAATGTCAAGATCGGTAAAGTGAAGCTGACCTATTATGATGGACAAGATTCAGAGTCTCTGATCCGTGGATTTGA
TAAAGGCGACTATACAGTTGCCCGTGTCTTCCCAAGTGGTTCTAACTATAAGAGTGTAGAGAAGAAGCATAAGGACGACA
TTGTCTTTAGTGACCAAGGTTCCTCTACCTACAACCTTTCCTTCAACATTGACCGTCAGTCTTATGAAATTACAGCCAAG
ACCACAGATGCTCAAAAGACTTCAACTAAGAAAGCAATTTTAAATAAAGACTTCCGTCAATCCATTATGTTTGCCTTCAA
CCGTAAGGCATATGTAGCTCAGGCGAACGGGGAAGCTGCTGCCAATAAGGTCATCCGTAATACCTTTACGCCACCAAACT
TTGTCCAAATCAATGGCCAACAATTTGGTGACGCAGTAGAAAAAGACTTGGAAGCTTATGGGGATGAATGGAAAGGGGTA
TCTGTCGCAGATGGAAAAGATACCCTCTATAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCTAAGGCAGACTTGCA
GGCTCAAGGAGTTGAATTCCCAATTCATTTGGACCTTCCAACTTCTTCTACTTATACGGAAGGAATCAAACAAGCCCAAT
CCTTCAAACAGTCGATTGAGTCAACTTTAGGAGCAGAAAATATTGTTATTGATCTGAAAATGATCTCAGATGATGATCTT
CAACGGGTGACTTACTTTGCTGAAAATGCATCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGACTA
TACGGACCCATCTTCTTACATCAATATCACTAGTGGTAAATCTGGTGAAAATGCCAATGCCTACTTTGGATTCGATGCTG
GTACCAACAATGCGGCCGCAAAAGCAGCTGGCTTTGATGAATACGATCAATTAATTGAGGATGCTCAAAAAGAAACCACA
GATGTGAACAAGCGTTATGAAAAATATGCTGCGGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATCCATTC
AGATGGAGCTTCTCCAGGTGTCCGTAAGACTGTACCATACTCCGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAATCCT
TCAACTATAAATATTTAGAAGTTCAAGACAAGGTCGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCCCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.212

100

0.564
  amiA3 Streptococcus thermophilus LMG 18311

56.061

100

0.562
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559

Multiple sequence alignment