Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ST4145_RS08655 Genome accession   NZ_CP065492
Coordinates   1680676..1681632 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1675676..1686632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS08620 (ST4145_08550) proC 1676236..1677006 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  ST4145_RS08625 (ST4145_08555) - 1677036..1677698 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  ST4145_RS08630 (ST4145_08560) - 1677795..1678238 (-) 444 WP_024010092.1 hypothetical protein -
  ST4145_RS08635 - 1678312..1678737 (-) 426 WP_082245829.1 CPBP family intramembrane glutamic endopeptidase -
  ST4145_RS08640 - 1678694..1678969 (-) 276 WP_011681681.1 hypothetical protein -
  ST4145_RS08645 (ST4145_08570) - 1678981..1679178 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  ST4145_RS08650 (ST4145_08575) - 1679427..1680620 (-) 1194 WP_014608740.1 acetate kinase -
  ST4145_RS08655 (ST4145_08580) comYH 1680676..1681632 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  ST4145_RS08660 (ST4145_08585) comGG 1681677..1681994 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  ST4145_RS08665 (ST4145_08590) comYF 1681972..1682409 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST4145_RS08670 (ST4145_08595) comGE 1682393..1682686 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  ST4145_RS08675 (ST4145_08600) comYD 1682658..1683086 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST4145_RS08680 (ST4145_08605) comYC 1683046..1683372 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  ST4145_RS08685 (ST4145_08610) comYB 1683369..1684469 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST4145_RS08690 (ST4145_08615) comGA/cglA/cilD 1684351..1685292 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  ST4145_RS08695 (ST4145_08620) - 1685373..1685735 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=510921 ST4145_RS08655 WP_011681684.1 1680676..1681632(-) (comYH) [Streptococcus thermophilus strain 4145]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510921 ST4145_RS08655 WP_011681684.1 1680676..1681632(-) (comYH) [Streptococcus thermophilus strain 4145]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682