Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST4145_RS07440 Genome accession   NZ_CP065492
Coordinates   1450794..1451831 (-) Length   345 a.a.
NCBI ID   WP_024010049.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1445794..1456831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS07415 (ST4145_07355) ilvD 1446046..1447749 (-) 1704 WP_014727663.1 dihydroxy-acid dehydratase -
  ST4145_RS07420 (ST4145_07360) - 1447877..1449058 (+) 1182 WP_024010048.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4145_RS07430 (ST4145_07370) trmB 1449294..1449935 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST4145_RS07435 (ST4145_07375) - 1449945..1450736 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST4145_RS07440 (ST4145_07380) pptB 1450794..1451831 (-) 1038 WP_024010049.1 ABC transporter permease Regulator
  ST4145_RS07445 (ST4145_07385) pptA 1451828..1452559 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST4145_RS07450 (ST4145_07390) - 1452624..1453043 (+) 420 WP_014621894.1 HIT family protein -
  ST4145_RS07455 (ST4145_07395) - 1453040..1453339 (+) 300 WP_014621895.1 hypothetical protein -
  ST4145_RS07460 (ST4145_07400) - 1453391..1454068 (-) 678 WP_011681532.1 hypothetical protein -
  ST4145_RS07465 (ST4145_07405) - 1454138..1454773 (-) 636 WP_011681533.1 DUF4230 domain-containing protein -
  ST4145_RS07470 - 1454792..1454917 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40131.66 Da        Isoelectric Point: 10.5243

>NTDB_id=510913 ST4145_RS07440 WP_024010049.1 1450794..1451831(-) (pptB) [Streptococcus thermophilus strain 4145]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSIKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMTNLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510913 ST4145_RS07440 WP_024010049.1 1450794..1451831(-) (pptB) [Streptococcus thermophilus strain 4145]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTCTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTATTAAACGCCGTGGTTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAC
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGACCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.965

99.71

0.977

  pptB Streptococcus salivarius strain HSISS4

92.442

99.71

0.922