Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ST4145_RS06670 Genome accession   NZ_CP065492
Coordinates   1300548..1302041 (-) Length   497 a.a.
NCBI ID   WP_024010009.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295548..1307041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS06640 (ST4145_06580) - 1295678..1296055 (+) 378 WP_024010003.1 GntR family transcriptional regulator -
  ST4145_RS06645 (ST4145_06585) - 1296060..1296758 (+) 699 WP_024010004.1 ABC transporter ATP-binding protein -
  ST4145_RS06650 (ST4145_06590) - 1296770..1297555 (+) 786 WP_082245809.1 ABC transporter permease -
  ST4145_RS06655 (ST4145_06595) amiF 1297605..1298534 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  ST4145_RS06660 (ST4145_06600) amiE 1298527..1299612 (-) 1086 WP_024010007.1 ABC transporter ATP-binding protein Regulator
  ST4145_RS06665 (ST4145_06605) amiD 1299622..1300548 (-) 927 WP_024010008.1 oligopeptide ABC transporter permease OppC Regulator
  ST4145_RS06670 (ST4145_06610) amiC 1300548..1302041 (-) 1494 WP_024010009.1 ABC transporter permease Regulator
  ST4145_RS06675 (ST4145_06615) amiA3 1302102..1304075 (-) 1974 WP_024010010.1 peptide ABC transporter substrate-binding protein Regulator
  ST4145_RS06680 (ST4145_06620) - 1304310..1304500 (-) 191 Protein_1261 IS3 family transposase -
  ST4145_RS06685 - 1304494..1304895 (-) 402 Protein_1262 ABC transporter ATP-binding protein -
  ST4145_RS06690 (ST4145_06635) - 1304890..1305250 (-) 361 Protein_1263 TatD family hydrolase -
  ST4145_RS06695 (ST4145_06640) - 1305597..1306790 (+) 1194 WP_100262689.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55835.63 Da        Isoelectric Point: 10.0158

>NTDB_id=510910 ST4145_RS06670 WP_024010009.1 1300548..1302041(-) (amiC) [Streptococcus thermophilus strain 4145]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=510910 ST4145_RS06670 WP_024010009.1 1300548..1302041(-) (amiC) [Streptococcus thermophilus strain 4145]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.378

100

0.964
  amiC Streptococcus thermophilus LMG 18311

96.378

100

0.964
  amiC Streptococcus salivarius strain HSISS4

95.775

100

0.958