Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   STCNRZ887_RS03195 Genome accession   NZ_CP065491
Coordinates   598111..599112 (+) Length   333 a.a.
NCBI ID   WP_002950245.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ887     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 593111..604112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ887_RS03175 (STCNRZ887_03175) smpB 594217..594681 (+) 465 WP_002950240.1 SsrA-binding protein SmpB -
  STCNRZ887_RS03180 (STCNRZ887_03180) - 594835..596241 (+) 1407 WP_011225702.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ887_RS03185 (STCNRZ887_03185) - 596243..596608 (+) 366 WP_002950243.1 S1 RNA-binding domain-containing protein -
  STCNRZ887_RS03190 (STCNRZ887_03190) - 596711..597796 (-) 1086 WP_011225703.1 Xaa-Pro peptidase family protein -
  STCNRZ887_RS03195 (STCNRZ887_03195) ccpA 598111..599112 (+) 1002 WP_002950245.1 catabolite control protein A Regulator
  STCNRZ887_RS03200 (STCNRZ887_03200) - 599171..599368 (+) 198 WP_011225705.1 hypothetical protein -
  STCNRZ887_RS03205 (STCNRZ887_03205) - 599474..600238 (+) 765 WP_011225706.1 MmcQ/YjbR family DNA-binding protein -
  STCNRZ887_RS03210 (STCNRZ887_03210) - 600253..601368 (+) 1116 WP_011225707.1 glycerate kinase -
  STCNRZ887_RS03215 (STCNRZ887_03215) - 601407..601862 (-) 456 WP_002950250.1 YueI family protein -
  STCNRZ887_RS03220 (STCNRZ887_03220) eno 602071..603375 (+) 1305 WP_011225708.1 surface-displayed alpha-enolase -
  STCNRZ887_RS03225 (STCNRZ887_03225) - 603527..603711 (-) 185 Protein_573 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36583.51 Da        Isoelectric Point: 5.8827

>NTDB_id=510835 STCNRZ887_RS03195 WP_002950245.1 598111..599112(+) (ccpA) [Streptococcus thermophilus strain CNRZ887]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIVNSYFA
TLAKGIDDIATMYKYNIVLASSDDNEDHEVTVIHSLISKQVDGIIFMGHHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKSGLEKNNLSYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVTSYTRPNLSSINHPLYDLGAVSMRMLTKIMHKEELEDKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=510835 STCNRZ887_RS03195 WP_002950245.1 598111..599112(+) (ccpA) [Streptococcus thermophilus strain CNRZ887]
ATGAATACTGATGAAACAATCACAATTTATGATGTAGCGCGTGAAGCTGGAGTATCGATGGCAACTGTTTCTCGTGTTGT
AAATGGTAACAAAAACGTAAAAGAAAACACCCGAAAAAAAGTGCTCGAAGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCAAGTAAAAAAACAACTACTGTAGGAGTTGTCATTCCAAATATTGTAAATAGCTATTTTGCT
ACTCTAGCTAAAGGTATTGATGACATTGCAACCATGTATAAGTATAATATTGTTCTTGCTTCCAGTGATGATAATGAGGA
TCATGAAGTTACAGTCATTCATTCTCTAATTTCTAAACAAGTTGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCAGAATTCTCTCGTACCCGTACACCGATTGTTCTAGCAGGAACAGTTGATCTCGAACACCAATTACCAAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTACGTTTGGCTGGGTATAAGTCTGGACTTGAAAAGAATAATTTGAGCT
ACAACGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGATTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGCAAATCAGTTCC
AGAAGATTTCGAAATCATCACAAGCAATGATTCACCGGTTACAAGCTACACACGTCCAAACCTTTCTAGTATAAACCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATTATGCATAAGGAAGAACTTGAAGATAAAGACGTT
ATTCTTAATCATGGTCTAACTTTACGCCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

76.276

100

0.763

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547