Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   STCNRZ1575_RS07705 Genome accession   NZ_CP065490
Coordinates   1476626..1477663 (-) Length   345 a.a.
NCBI ID   WP_087010122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1471626..1482663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS07680 (STCNRZ1575_07660) ilvD 1471878..1473581 (-) 1704 WP_014727663.1 dihydroxy-acid dehydratase -
  STCNRZ1575_RS07685 (STCNRZ1575_07665) - 1473709..1474890 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STCNRZ1575_RS07695 (STCNRZ1575_07675) trmB 1475126..1475767 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STCNRZ1575_RS07700 (STCNRZ1575_07680) - 1475777..1476568 (-) 792 WP_002951667.1 phosphotransferase family protein -
  STCNRZ1575_RS07705 (STCNRZ1575_07685) pptB 1476626..1477663 (-) 1038 WP_087010122.1 ABC transporter permease Regulator
  STCNRZ1575_RS07710 (STCNRZ1575_07690) pptA 1477660..1478391 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1575_RS07715 (STCNRZ1575_07695) - 1478456..1478875 (+) 420 WP_014621894.1 HIT family protein -
  STCNRZ1575_RS07720 (STCNRZ1575_07700) - 1478872..1479171 (+) 300 WP_101415677.1 hypothetical protein -
  STCNRZ1575_RS07725 (STCNRZ1575_07705) - 1479223..1479951 (-) 729 WP_023909893.1 hypothetical protein -
  STCNRZ1575_RS07730 (STCNRZ1575_07710) - 1479969..1480604 (-) 636 WP_023909894.1 DUF4230 domain-containing protein -
  STCNRZ1575_RS07735 - 1480623..1480748 (-) 126 WP_260214188.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40225.78 Da        Isoelectric Point: 10.5363

>NTDB_id=510796 STCNRZ1575_RS07705 WP_087010122.1 1476626..1477663(-) (pptB) [Streptococcus thermophilus strain CNRZ1575]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=510796 STCNRZ1575_RS07705 WP_087010122.1 1476626..1477663(-) (pptB) [Streptococcus thermophilus strain CNRZ1575]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATTCTGGTTCTTCTTTTTTTGCTGGGTTTTGTTTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTACCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
ATACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
ACAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.965

99.71

0.977

  pptB Streptococcus salivarius strain HSISS4

92.442

99.71

0.922