Detailed information NTG0510674

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: STAVA1121_RS06875
• Genome accession: NZ_CP065488
• Coordinates: 1291980..1292906 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain AVA1121
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1286980..1297906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA1121_RS06845 (STAVA1121_06760)	-	1287058..1287852 (-)	795	WP_347131148.1	HAD family hydrolase	-
STAVA1121_RS06850 (STAVA1121_06765)	-	1288036..1288413 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
STAVA1121_RS06855 (STAVA1121_06770)	-	1288418..1289116 (+)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
STAVA1121_RS06860 (STAVA1121_06775)	-	1289128..1289913 (+)	786	WP_002951425.1	hypothetical protein	-
STAVA1121_RS06865 (STAVA1121_06780)	amiF	1289963..1290892 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
STAVA1121_RS06870 (STAVA1121_06785)	amiE	1290885..1291970 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
STAVA1121_RS06875 (STAVA1121_06790)	amiD	1291980..1292906 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
STAVA1121_RS06880 (STAVA1121_06795)	-	1292906..1294398 (-)	1493	Protein_1300	ABC transporter permease	-
STAVA1121_RS06885 (STAVA1121_06800)	amiA	1294460..1296373 (-)	1914	WP_347131149.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=510674 STAVA1121_RS06875 WP_002946409.1 1291980..1292906(-) (amiD) [Streptococcus thermophilus strain AVA1121]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=510674 STAVA1121_RS06875 WP_002946409.1 1291980..1292906(-) (amiD) [Streptococcus thermophilus strain AVA1121]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCTATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964