Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STAVA1121_RS06865 Genome accession   NZ_CP065488
Coordinates   1289963..1290892 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus strain AVA1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284963..1295892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS06840 (STAVA1121_06755) - 1286247..1287065 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  STAVA1121_RS06845 (STAVA1121_06760) - 1287058..1287852 (-) 795 WP_347131148.1 HAD family hydrolase -
  STAVA1121_RS06850 (STAVA1121_06765) - 1288036..1288413 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  STAVA1121_RS06855 (STAVA1121_06770) - 1288418..1289116 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  STAVA1121_RS06860 (STAVA1121_06775) - 1289128..1289913 (+) 786 WP_002951425.1 hypothetical protein -
  STAVA1121_RS06865 (STAVA1121_06780) amiF 1289963..1290892 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STAVA1121_RS06870 (STAVA1121_06785) amiE 1290885..1291970 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS06875 (STAVA1121_06790) amiD 1291980..1292906 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STAVA1121_RS06880 (STAVA1121_06795) - 1292906..1294398 (-) 1493 Protein_1300 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=510672 STAVA1121_RS06865 WP_002951426.1 1289963..1290892(-) (amiF) [Streptococcus thermophilus strain AVA1121]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=510672 STAVA1121_RS06865 WP_002951426.1 1289963..1290892(-) (amiF) [Streptococcus thermophilus strain AVA1121]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981