Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7A_RS11860 Genome accession   NC_017857
Coordinates   2508817..2510319 (-) Length   500 a.a.
NCBI ID   WP_014707844.1    Uniprot ID   I1XM64
Organism   Methylophaga nitratireducenticrescens     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2494090..2518785 2508817..2510319 within 0


Gene organization within MGE regions


Location: 2494090..2518785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7A_RS11785 (Q7A_03745) - 2494897..2495370 (-) 474 WP_041354654.1 hypothetical protein -
  Q7A_RS11790 (Q7A_2681) - 2495443..2496291 (-) 849 WP_014707830.1 DUF3883 domain-containing protein -
  Q7A_RS11795 (Q7A_2682) - 2496512..2497345 (-) 834 WP_014707831.1 DUF3307 domain-containing protein -
  Q7A_RS11800 (Q7A_2683) - 2497338..2497976 (-) 639 WP_014707832.1 SatD family protein -
  Q7A_RS11805 (Q7A_2684) - 2498439..2498630 (-) 192 WP_014707833.1 AAA family ATPase -
  Q7A_RS11810 (Q7A_2685) - 2498711..2499061 (-) 351 WP_014707834.1 DUF2200 domain-containing protein -
  Q7A_RS11815 (Q7A_2686) - 2499152..2499790 (-) 639 WP_089418540.1 hypothetical protein -
  Q7A_RS11820 (Q7A_2687) - 2499831..2500163 (-) 333 WP_014707836.1 DUF2200 family protein -
  Q7A_RS11825 (Q7A_03750) - 2500363..2500842 (-) 480 WP_041354656.1 hypothetical protein -
  Q7A_RS11830 (Q7A_2688) - 2501495..2502523 (-) 1029 WP_041354658.1 IS110 family transposase -
  Q7A_RS11835 (Q7A_2689) - 2502719..2504080 (-) 1362 WP_014707838.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  Q7A_RS11840 (Q7A_2690) - 2504480..2504953 (-) 474 WP_014707839.1 cupin domain-containing protein -
  Q7A_RS11845 (Q7A_2692) - 2505603..2505821 (+) 219 WP_014707841.1 hypothetical protein -
  Q7A_RS11850 (Q7A_2693) - 2505903..2506754 (-) 852 WP_014707842.1 YcnI family protein -
  Q7A_RS11855 (Q7A_2694) rep 2506798..2508810 (-) 2013 WP_014707843.1 DNA helicase Rep -
  Q7A_RS11860 (Q7A_2695) comM 2508817..2510319 (-) 1503 WP_014707844.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7A_RS11865 (Q7A_2697) - 2510701..2510967 (-) 267 WP_014707846.1 hypothetical protein -
  Q7A_RS11870 (Q7A_2698) - 2511088..2511963 (+) 876 WP_014707847.1 LysR family transcriptional regulator -
  Q7A_RS11875 (Q7A_2699) - 2511966..2513666 (-) 1701 WP_014707848.1 methyl-accepting chemotaxis protein -
  Q7A_RS15570 - 2513843..2514022 (+) 180 WP_014707849.1 hypothetical protein -
  Q7A_RS15575 - 2514043..2514357 (+) 315 WP_014707850.1 DUF481 domain-containing protein -
  Q7A_RS11885 (Q7A_2702) - 2514342..2515238 (-) 897 WP_014707851.1 LysR family transcriptional regulator -
  Q7A_RS11890 (Q7A_2703) - 2515226..2516242 (-) 1017 WP_014707852.1 phosphonate dehydrogenase -
  Q7A_RS11895 (Q7A_2704) phnE 2516252..2517058 (-) 807 WP_014707853.1 phosphonate ABC transporter, permease protein PhnE -
  Q7A_RS11900 (Q7A_2705) phnD 2517068..2517931 (-) 864 WP_089418541.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  Q7A_RS11905 (Q7A_2707) phnC 2517931..2518785 (-) 855 WP_041355256.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54377.05 Da        Isoelectric Point: 6.7729

>NTDB_id=51065 Q7A_RS11860 WP_014707844.1 2508817..2510319(-) (comM) [Methylophaga nitratireducenticrescens]
MSIATVYSRALTGIYAQAVTVEVHLSNGLPSLSIVGMAETAVKESKDRVRSALINSQFTFPQQRITINLAPADLPKEGGR
FDLPIALGILAASNQIPVQSLSNMEFIGELGLTGELRAVRGVLPTALATSEANRQLMVPFENAEEAALTEQGESFAAKTL
LEVCAHLHDQLRLPANLNQQQHSQNNYADLADVRGQASARRALEIAAAGSHSILFAGPPGTGKTMLASRLPGILPPMSEQ
EAIETATIHSISSAGFQVENWMQRPFRAPHHTASAVALVGGGSQPKPGEISLANNGVLFLDELPEYDRKVLEVLREPIES
GKITISRAANQADFPSKFQLVAAMNPCPCGYLGQARCHCTEEQVRRYRGKISGPLLDRIDMLMEVPAVDKKLLRPQPDDV
PPESSEVVRQRVIQARQIQLDRANKANASLQHKELEVFCTLSDQDFQLVEKAISRFGLSARAYHRILKVARTIADLVGSS
DIQTVHLTEAIGYRRLDTAN

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=51065 Q7A_RS11860 WP_014707844.1 2508817..2510319(-) (comM) [Methylophaga nitratireducenticrescens]
ATGAGTATTGCCACGGTTTACAGTCGTGCTTTGACCGGTATTTATGCTCAGGCAGTGACGGTTGAAGTGCATCTTTCCAA
TGGTCTGCCTAGTTTATCGATTGTCGGCATGGCGGAAACGGCGGTGAAGGAAAGCAAGGATCGCGTTCGTTCGGCATTGA
TAAACTCTCAGTTCACTTTTCCTCAGCAACGTATCACTATTAATCTGGCTCCGGCAGATTTGCCCAAAGAAGGCGGGCGT
TTTGATTTACCGATAGCGTTGGGTATTCTGGCAGCTTCCAATCAAATACCCGTGCAATCATTAAGCAATATGGAGTTTAT
CGGTGAGCTGGGTCTGACGGGTGAATTACGTGCGGTTCGAGGTGTATTACCCACTGCGTTAGCCACATCTGAGGCTAACC
GACAATTAATGGTGCCATTTGAGAATGCTGAAGAGGCGGCGCTTACTGAACAGGGTGAGAGTTTTGCTGCGAAGACCTTG
TTGGAAGTCTGTGCACATTTGCATGACCAATTGCGGTTACCAGCCAATCTGAATCAACAGCAGCATAGTCAAAATAATTA
TGCTGACTTAGCCGATGTGCGTGGTCAGGCATCCGCCAGACGAGCTCTGGAAATTGCTGCAGCTGGATCACATAGCATTT
TATTTGCCGGGCCACCCGGTACGGGCAAAACCATGTTGGCCAGTCGTTTGCCGGGAATTTTGCCACCAATGAGTGAGCAG
GAAGCAATTGAAACGGCGACCATTCATTCAATTTCATCAGCGGGATTTCAAGTTGAAAACTGGATGCAGCGACCTTTTCG
AGCGCCACATCATACGGCTTCGGCGGTGGCTTTGGTTGGTGGTGGCAGTCAGCCTAAACCGGGTGAAATTTCTTTAGCAA
ACAACGGCGTCTTATTTCTTGATGAATTGCCTGAATATGACCGTAAAGTATTAGAAGTTTTACGCGAGCCAATTGAATCC
GGAAAAATAACTATTTCCCGTGCTGCCAATCAAGCAGATTTTCCGTCTAAATTTCAATTAGTTGCCGCAATGAATCCCTG
TCCGTGTGGTTATCTGGGGCAGGCAAGATGCCATTGCACAGAAGAGCAAGTCAGACGCTACCGTGGTAAGATCTCCGGCC
CGTTATTGGATCGCATTGATATGTTAATGGAGGTACCGGCAGTGGATAAAAAACTGTTGCGACCTCAGCCTGATGATGTG
CCGCCTGAGTCCAGTGAAGTGGTTCGTCAGCGGGTGATTCAGGCACGGCAGATTCAACTTGATCGTGCCAACAAAGCCAA
TGCGTCCCTGCAACATAAAGAACTAGAGGTTTTTTGCACCTTGTCAGATCAGGATTTTCAATTAGTAGAAAAAGCTATCA
GCCGTTTTGGTCTGTCGGCGCGTGCTTATCATCGTATTTTAAAAGTGGCCCGCACCATTGCTGATTTGGTCGGTTCATCT
GACATTCAAACAGTCCATTTAACAGAAGCCATCGGCTATCGACGCCTCGACACAGCGAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1XM64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.4

100

0.564
  comM Vibrio campbellii strain DS40M4

56.2

100

0.562
  comM Haemophilus influenzae Rd KW20

55.11

99.8

0.55
  comM Glaesserella parasuis strain SC1401

54.365

100

0.548
  comM Legionella pneumophila str. Paris

53.012

99.6

0.528
  comM Legionella pneumophila strain ERS1305867

53.012

99.6

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.548

100

0.472

Multiple sequence alignment