Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STMM20_RS01620 Genome accession   NZ_CP065485
Coordinates   305467..305985 (+) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain MM20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300467..310985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS01590 (STMM20_01615) - 300816..301160 (+) 345 WP_347103587.1 hypothetical protein -
  STMM20_RS01595 (STMM20_01620) - 301147..301374 (+) 228 WP_011681629.1 hypothetical protein -
  STMM20_RS01600 (STMM20_01625) - 301477..301728 (+) 252 WP_011226551.1 hypothetical protein -
  STMM20_RS01605 (STMM20_01630) mutY 302055..303206 (-) 1152 WP_011681626.1 A/G-specific adenine glycosylase -
  STMM20_RS01610 (STMM20_01635) - 303993..304946 (-) 954 WP_011681625.1 hypothetical protein -
  STMM20_RS01615 (STMM20_01640) rpsF 305165..305455 (+) 291 WP_011681624.1 30S ribosomal protein S6 -
  STMM20_RS01620 (STMM20_01645) ssb 305467..305985 (+) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STMM20_RS01625 (STMM20_01650) rpsR 306027..306266 (+) 240 WP_002945024.1 30S ribosomal protein S18 -
  STMM20_RS01630 (STMM20_01655) - 306393..307274 (-) 882 WP_011681623.1 DUF4300 family protein -
  STMM20_RS01635 (STMM20_01660) - 307391..308062 (-) 672 WP_011681622.1 DUF1129 domain-containing protein -
  STMM20_RS01640 (STMM20_01665) - 308133..309077 (-) 945 WP_002951901.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=510466 STMM20_RS01620 WP_002951905.1 305467..305985(+) (ssb) [Streptococcus thermophilus strain MM20]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=510466 STMM20_RS01620 WP_002951905.1 305467..305985(+) (ssb) [Streptococcus thermophilus strain MM20]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366