Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STMM1_RS06825 Genome accession   NZ_CP065484
Coordinates   1312592..1314085 (-) Length   497 a.a.
NCBI ID   WP_014608541.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307592..1319085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS06795 (STMM1_06750) - 1307722..1308099 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STMM1_RS06800 (STMM1_06755) - 1308104..1308802 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  STMM1_RS06805 (STMM1_06760) - 1308814..1309599 (+) 786 WP_002951425.1 hypothetical protein -
  STMM1_RS06810 (STMM1_06765) amiF 1309649..1310578 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STMM1_RS06815 (STMM1_06770) amiE 1310571..1311656 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STMM1_RS06820 (STMM1_06775) amiD 1311666..1312592 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STMM1_RS06825 (STMM1_06780) amiC 1312592..1314085 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  STMM1_RS06830 (STMM1_06785) amiA 1314147..1316114 (-) 1968 WP_347113471.1 peptide ABC transporter substrate-binding protein Regulator
  STMM1_RS06835 (STMM1_06790) - 1316470..1317720 (+) 1251 Protein_1292 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55649.53 Da        Isoelectric Point: 10.0972

>NTDB_id=510432 STMM1_RS06825 WP_014608541.1 1312592..1314085(-) (amiC) [Streptococcus thermophilus strain MM1]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=510432 STMM1_RS06825 WP_014608541.1 1312592..1314085(-) (amiC) [Streptococcus thermophilus strain MM1]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.799

100

0.998
  amiC Streptococcus thermophilus LMG 18311

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972