Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   STMM1_RS06815 Genome accession   NZ_CP065484
Coordinates   1310571..1311656 (-) Length   361 a.a.
NCBI ID   WP_011226304.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1305571..1316656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS06785 (STMM1_06740) - 1305935..1306750 (-) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -
  STMM1_RS06790 (STMM1_06745) - 1306743..1307537 (-) 795 WP_011681412.1 HAD family hydrolase -
  STMM1_RS06795 (STMM1_06750) - 1307722..1308099 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STMM1_RS06800 (STMM1_06755) - 1308104..1308802 (+) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  STMM1_RS06805 (STMM1_06760) - 1308814..1309599 (+) 786 WP_002951425.1 hypothetical protein -
  STMM1_RS06810 (STMM1_06765) amiF 1309649..1310578 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STMM1_RS06815 (STMM1_06770) amiE 1310571..1311656 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STMM1_RS06820 (STMM1_06775) amiD 1311666..1312592 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STMM1_RS06825 (STMM1_06780) amiC 1312592..1314085 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  STMM1_RS06830 (STMM1_06785) amiA 1314147..1316114 (-) 1968 WP_347113471.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39864.62 Da        Isoelectric Point: 4.7435

>NTDB_id=510430 STMM1_RS06815 WP_011226304.1 1310571..1311656(-) (amiE) [Streptococcus thermophilus strain MM1]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDNGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=510430 STMM1_RS06815 WP_011226304.1 1310571..1311656(-) (amiE) [Streptococcus thermophilus strain MM1]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGAAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATCGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGTATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGATGATAATGGAAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

100

100

1

  amiE Streptococcus thermophilus LMD-9

100

100

1

  amiE Streptococcus salivarius strain HSISS4

96.953

100

0.97

  oppD Streptococcus mutans UA159

54.441

96.676

0.526