Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST90729_RS07615 Genome accession   NZ_CP065480
Coordinates   1477867..1478901 (-) Length   344 a.a.
NCBI ID   WP_347116578.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1472867..1483901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS07590 (ST90729_07575) ilvD 1473115..1474818 (-) 1704 WP_014727663.1 dihydroxy-acid dehydratase -
  ST90729_RS07595 (ST90729_07580) - 1474946..1476127 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST90729_RS07605 (ST90729_07590) trmB 1476363..1477004 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST90729_RS07610 (ST90729_07595) - 1477014..1477805 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST90729_RS07615 (ST90729_07600) pptB 1477867..1478901 (-) 1035 WP_347116578.1 ABC transporter permease Regulator
  ST90729_RS07620 (ST90729_07605) pptA 1478898..1479629 (-) 732 WP_232973643.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS07625 (ST90729_07610) - 1479694..1480113 (+) 420 WP_002891660.1 HIT family protein -
  ST90729_RS07630 (ST90729_07615) - 1480110..1480409 (+) 300 WP_002947522.1 hypothetical protein -
  ST90729_RS07635 (ST90729_07620) - 1480461..1481141 (-) 681 WP_347116579.1 hypothetical protein -
  ST90729_RS07640 (ST90729_07625) - 1481211..1481846 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  ST90729_RS07645 - 1481865..1481990 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40080.68 Da        Isoelectric Point: 10.5248

>NTDB_id=510203 ST90729_RS07615 WP_347116578.1 1477867..1478901(-) (pptB) [Streptococcus thermophilus strain 90729]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKCTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQWMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=510203 ST90729_RS07615 WP_347116578.1 1477867..1478901(-) (pptB) [Streptococcus thermophilus strain 90729]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
GTACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTATCAATGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
ACAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.376

99.709

0.971

  pptB Streptococcus salivarius strain HSISS4

92.128

99.709

0.919