Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ST90729_RS07620 Genome accession   NZ_CP065480
Coordinates   1478898..1479629 (-) Length   243 a.a.
NCBI ID   WP_232973643.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473898..1484629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS07595 (ST90729_07580) - 1474946..1476127 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST90729_RS07605 (ST90729_07590) trmB 1476363..1477004 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST90729_RS07610 (ST90729_07595) - 1477014..1477805 (-) 792 WP_002951667.1 phosphotransferase family protein -
  ST90729_RS07615 (ST90729_07600) pptB 1477867..1478901 (-) 1035 WP_347116578.1 ABC transporter permease Regulator
  ST90729_RS07620 (ST90729_07605) pptA 1478898..1479629 (-) 732 WP_232973643.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS07625 (ST90729_07610) - 1479694..1480113 (+) 420 WP_002891660.1 HIT family protein -
  ST90729_RS07630 (ST90729_07615) - 1480110..1480409 (+) 300 WP_002947522.1 hypothetical protein -
  ST90729_RS07635 (ST90729_07620) - 1480461..1481141 (-) 681 WP_347116579.1 hypothetical protein -
  ST90729_RS07640 (ST90729_07625) - 1481211..1481846 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  ST90729_RS07645 - 1481865..1481990 (-) 126 WP_011681534.1 hypothetical protein -
  ST90729_RS07650 (ST90729_07630) - 1482399..1484498 (-) 2100 WP_022096464.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26812.01 Da        Isoelectric Point: 4.4606

>NTDB_id=510204 ST90729_RS07620 WP_232973643.1 1478898..1479629(-) (pptA) [Streptococcus thermophilus strain 90729]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYIQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=510204 ST90729_RS07620 WP_232973643.1 1478898..1479629(-) (pptA) [Streptococcus thermophilus strain 90729]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGATTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATACAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967