Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ST90729_RS03215 Genome accession   NZ_CP065480
Coordinates   595782..596783 (+) Length   333 a.a.
NCBI ID   WP_002950245.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 590782..601783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS03195 (ST90729_03180) smpB 591888..592352 (+) 465 WP_002950240.1 SsrA-binding protein SmpB -
  ST90729_RS03200 (ST90729_03185) - 592506..593912 (+) 1407 WP_011680934.1 Cof-type HAD-IIB family hydrolase -
  ST90729_RS03205 (ST90729_03190) - 593914..594279 (+) 366 WP_002950243.1 S1 RNA-binding domain-containing protein -
  ST90729_RS03210 (ST90729_03195) - 594382..595467 (-) 1086 WP_011225703.1 Xaa-Pro peptidase family protein -
  ST90729_RS03215 (ST90729_03200) ccpA 595782..596783 (+) 1002 WP_002950245.1 catabolite control protein A Regulator
  ST90729_RS03220 (ST90729_03205) - 596842..597039 (+) 198 WP_011225705.1 hypothetical protein -
  ST90729_RS03225 (ST90729_03210) - 597112..597717 (+) 606 WP_347116750.1 MmcQ/YjbR family DNA-binding protein -
  ST90729_RS03230 (ST90729_03215) - 597925..599040 (+) 1116 WP_211836986.1 glycerate kinase -
  ST90729_RS03235 (ST90729_03220) - 599079..599534 (-) 456 WP_002950250.1 YueI family protein -
  ST90729_RS03240 (ST90729_03225) eno 599743..601047 (+) 1305 WP_011225708.1 surface-displayed alpha-enolase -
  ST90729_RS03245 (ST90729_03230) - 601199..601383 (-) 185 Protein_577 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36583.51 Da        Isoelectric Point: 5.8827

>NTDB_id=510183 ST90729_RS03215 WP_002950245.1 595782..596783(+) (ccpA) [Streptococcus thermophilus strain 90729]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIVNSYFA
TLAKGIDDIATMYKYNIVLASSDDNEDHEVTVIHSLISKQVDGIIFMGHHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKSGLEKNNLSYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVTSYTRPNLSSINHPLYDLGAVSMRMLTKIMHKEELEDKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=510183 ST90729_RS03215 WP_002950245.1 595782..596783(+) (ccpA) [Streptococcus thermophilus strain 90729]
ATGAATACTGATGAAACAATCACAATTTATGATGTAGCGCGTGAAGCTGGAGTATCGATGGCAACTGTTTCTCGTGTTGT
AAATGGTAACAAAAACGTAAAAGAAAACACCCGAAAAAAAGTGCTCGAAGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAAAAAACAACTACTGTAGGAGTTGTCATTCCAAATATTGTAAATAGCTATTTTGCT
ACTCTAGCTAAAGGTATTGATGACATTGCAACCATGTATAAGTATAATATTGTTCTTGCTTCCAGTGATGATAATGAGGA
TCATGAAGTTACAGTCATTCATTCTCTAATTTCTAAACAAGTTGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCAGAATTCTCTCGTACCCGTACACCGATTGTTCTAGCAGGAACAGTTGATCTCGAACACCAATTACCAAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTACGTTTGGCCGGGTATAAGTCTGGACTTGAAAAGAATAATTTGAGCT
ACAACGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGATTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGCAAATCAGTTCC
AGAAGATTTCGAAATCATCACAAGCAATGATTCACCGGTTACAAGCTACACACGTCCAAACCTTTCTAGTATAAACCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATTATGCATAAGGAAGAACTTGAAGATAAAGACGTT
ATTCTTAATCATGGTCTAACTTTACGCCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

76.276

100

0.763

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547