Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   ST90728_RS05660 Genome accession   NZ_CP065479
Coordinates   1084221..1085561 (-) Length   446 a.a.
NCBI ID   WP_011226083.1    Uniprot ID   A0A060BIR3
Organism   Streptococcus thermophilus strain 90728     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079221..1090561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS05630 (ST90728_05635) - 1079339..1079725 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  ST90728_RS05635 (ST90728_05640) - 1079783..1080697 (-) 915 Protein_1055 GNAT family N-acetyltransferase -
  ST90728_RS05640 (ST90728_05645) yidA 1080905..1081714 (+) 810 WP_011226081.1 sugar-phosphatase -
  ST90728_RS05645 (ST90728_05650) - 1081716..1082930 (+) 1215 WP_002953123.1 aminoacyltransferase -
  ST90728_RS05650 (ST90728_05655) - 1082982..1083343 (-) 362 Protein_1058 YbaN family protein -
  ST90728_RS05655 (ST90728_05660) vicX 1083403..1084215 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  ST90728_RS05660 (ST90728_05665) vicK 1084221..1085561 (-) 1341 WP_011226083.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ST90728_RS05665 (ST90728_05670) vicR 1085554..1086261 (-) 708 WP_173940375.1 response regulator YycF Regulator
  ST90728_RS05670 (ST90728_05675) - 1086788..1087555 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  ST90728_RS05675 (ST90728_05680) - 1087567..1088400 (+) 834 WP_002953142.1 transporter substrate-binding domain-containing protein -
  ST90728_RS05680 (ST90728_05685) - 1088418..1089116 (+) 699 WP_065973256.1 amino acid ABC transporter permease -
  ST90728_RS05685 (ST90728_05690) - 1089128..1089778 (+) 651 WP_011226088.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50782.15 Da        Isoelectric Point: 5.2464

>NTDB_id=510128 ST90728_RS05660 WP_011226083.1 1084221..1085561(-) (vicK) [Streptococcus thermophilus strain 90728]
MTSIGLNITSFELALLFMLLFVAFYFIFLAYRDYQQVKNIRKLTKRVKSLMAGNYNEKLCIKGDSELLELANSLNDLSDV
FRLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNLDRETATQMSILDILDGENPYTYSELLSKTPEI
HLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALNE
EIAPNFIKVSLDETNRMMRMITDLLALSRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSI
WVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGL
GLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLPYDQDAMMVDEWEM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=510128 ST90728_RS05660 WP_011226083.1 1084221..1085561(-) (vicK) [Streptococcus thermophilus strain 90728]
ATGACTAGTATTGGCTTAAATATTACAAGCTTTGAACTGGCCTTACTCTTTATGCTCCTCTTTGTTGCTTTCTATTTCAT
TTTTCTAGCTTATCGTGATTATCAACAGGTCAAAAATATCCGAAAGTTGACTAAGAGAGTCAAATCCCTTATGGCAGGTA
ATTATAATGAAAAATTATGCATAAAGGGAGATTCAGAGCTTTTAGAGCTAGCTAATAGCTTGAATGATTTGTCGGACGTC
TTTCGTTTGACACATGAAAATCTAATCCAGGAAAAAAACCGCTTATCATCTGTCCTTTCGTACATGAGTGACGGGGTTAT
TGCGACCAATCGCCTTGGTCAGATTACTATGATTAATAGTACTGCCCAACGCTTGTTGAATTTAGATCGCGAAACTGCGA
CTCAGATGTCTATTTTGGATATATTAGATGGTGAGAATCCCTATACCTATAGTGAATTGTTGTCTAAGACACCCGAAATC
CATCTGTCGCGTCGAGATGCTAACGATGAATTTGTGACGCTACGTGTTAATTTTGCATTAATTCGTAAGGAATCTGGTTT
TATTTCAGGTCTGGTAGCCGTTCTTCATGATGCCACTGAGCAGGAAAAAGAAGAGCGCGAACGCCGTCTCTTCGTATCAA
ATGTTAGTCACGAATTGCGGACGCCTTTAACTTCTGTGAAATCCTATCTTGAAGCGCTTGATGATGGTGCTCTCAACGAA
GAGATTGCTCCAAACTTTATCAAAGTTTCTTTAGATGAAACCAACCGCATGATGCGTATGATTACTGACCTCTTGGCATT
ATCTCGAATTGACAATAAAAGCACACAGCTTAATGTTGAAATGACAAACTTTACAGCCTTTATGACCTATATCTTGAATC
GGTTTGGTCAAATTAAGAGTCAAGAAACTAATCCAGGTAAGTCTTATGAAATCATTCGAGATTACCCAGTAAACTCTATT
TGGGTGGAAATTGATACTGATAAGATGACCCAGGTCATAGATAATATACTTAATAATGCCATCAAGTATTCTCCTGATGG
TGGGAAAATTACAGTATCTATGAAAACGACAGACACTCAGTTGATTGTTTCTATTTCTGACCAAGGTTTAGGAATTCCTA
AAAAAGATTTACCTCTGATTTTTGACCGTTTTTACCGTGTTGATAAGGCCAGAAGTCGTGCTCAGGGTGGAACAGGACTT
GGCTTATCCATTGCAAAAGAAATTGTTAAACAACATAATGGCTTCATTTGGGCTAAGAGTGAGTATGGTAAGGGATCAAC
TTTTACAATTGTGCTTCCATATGACCAGGACGCAATGATGGTCGATGAATGGGAGATGTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(208-272)

HAMP domain (HAMP)

(37-79)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-435)

PAS fold (PAS)

(94-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060BIR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

74.638

92.825

0.693
  micB Streptococcus pneumoniae Cp1015

66.282

97.085

0.644