Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ST90728_RS05655 Genome accession   NZ_CP065479
Coordinates   1083403..1084215 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain 90728     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078403..1089215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS05630 (ST90728_05635) - 1079339..1079725 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  ST90728_RS05635 (ST90728_05640) - 1079783..1080697 (-) 915 Protein_1055 GNAT family N-acetyltransferase -
  ST90728_RS05640 (ST90728_05645) yidA 1080905..1081714 (+) 810 WP_011226081.1 sugar-phosphatase -
  ST90728_RS05645 (ST90728_05650) - 1081716..1082930 (+) 1215 WP_002953123.1 aminoacyltransferase -
  ST90728_RS05650 (ST90728_05655) - 1082982..1083343 (-) 362 Protein_1058 YbaN family protein -
  ST90728_RS05655 (ST90728_05660) vicX 1083403..1084215 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  ST90728_RS05660 (ST90728_05665) vicK 1084221..1085561 (-) 1341 WP_011226083.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ST90728_RS05665 (ST90728_05670) vicR 1085554..1086261 (-) 708 WP_173940375.1 response regulator YycF Regulator
  ST90728_RS05670 (ST90728_05675) - 1086788..1087555 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  ST90728_RS05675 (ST90728_05680) - 1087567..1088400 (+) 834 WP_002953142.1 transporter substrate-binding domain-containing protein -
  ST90728_RS05680 (ST90728_05685) - 1088418..1089116 (+) 699 WP_065973256.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=510127 ST90728_RS05655 WP_011681204.1 1083403..1084215(-) (vicX) [Streptococcus thermophilus strain 90728]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=510127 ST90728_RS05655 WP_011681204.1 1083403..1084215(-) (vicX) [Streptococcus thermophilus strain 90728]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCTGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774