Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KU519_RS13055 Genome accession   NZ_CP077888
Coordinates   2619033..2619635 (-) Length   200 a.a.
NCBI ID   WP_225806503.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614033..2624635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU519_RS13035 (KU519_13035) yajC 2615529..2615789 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  KU519_RS13040 (KU519_13040) tgt 2615808..2616947 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KU519_RS13045 (KU519_13045) queA 2616970..2617995 (-) 1026 WP_001019182.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KU519_RS13050 (KU519_13050) ruvB 2617997..2619001 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KU519_RS13055 (KU519_13055) ruvA 2619033..2619635 (-) 603 WP_225806503.1 Holliday junction branch migration protein RuvA Machinery gene
  KU519_RS13060 (KU519_13060) - 2619649..2620104 (-) 456 WP_000368902.1 ACT domain-containing protein -
  KU519_RS13065 (KU519_13065) obgE 2620117..2621409 (-) 1293 WP_000496100.1 GTPase ObgE -
  KU519_RS13070 (KU519_13070) rpmA 2621764..2622048 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  KU519_RS13075 (KU519_13075) - 2622060..2622380 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KU519_RS13080 (KU519_13080) rplU 2622386..2622694 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  KU519_RS13085 (KU519_13085) mreD 2622861..2623391 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  KU519_RS13090 (KU519_13090) mreC 2623391..2624233 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  KU519_RS13095 (KU519_13095) - 2624433..2624552 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22317.54 Da        Isoelectric Point: 6.3484

>NTDB_id=509899 KU519_RS13055 WP_225806503.1 2619033..2619635(-) (ruvA) [Staphylococcus aureus strain 334]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSRVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=509899 KU519_RS13055 WP_225806503.1 2619033..2619635(-) (ruvA) [Staphylococcus aureus strain 334]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGAGGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.786

100

0.43