Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I5593_RS01585 Genome accession   NZ_CP065432
Coordinates   341715..342197 (+) Length   160 a.a.
NCBI ID   WP_001046419.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336715..347197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS01575 (I5593_01575) pilX 337018..337836 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I5593_RS01580 (I5593_01580) pilY1 337848..341702 (+) 3855 WP_000768945.1 PilC/PilY family type IV pilus protein Machinery gene
  I5593_RS01585 (I5593_01585) pilY2 341715..342197 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  I5593_RS01590 (I5593_01590) pilE 342194..342619 (+) 426 WP_000788338.1 type IV pilin protein Machinery gene
  I5593_RS01595 (I5593_01595) rpsP 342766..343017 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I5593_RS01600 (I5593_01600) rimM 343037..343585 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  I5593_RS01605 (I5593_01605) trmD 343631..344371 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I5593_RS01610 (I5593_01610) rplS 344579..344947 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  I5593_RS01615 (I5593_01615) - 345001..345942 (-) 942 WP_100223346.1 triacylglycerol lipase -
  I5593_RS01620 (I5593_01620) - 346057..347091 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17547.78 Da        Isoelectric Point: 8.4834

>NTDB_id=509603 I5593_RS01585 WP_001046419.1 341715..342197(+) (pilY2) [Acinetobacter baumannii strain ATCC 17961]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=509603 I5593_RS01585 WP_001046419.1 341715..342197(+) (pilY2) [Acinetobacter baumannii strain ATCC 17961]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCAAATGGGCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

39.535

100

0.425