Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I5593_RS01575 Genome accession   NZ_CP065432
Coordinates   337018..337836 (+) Length   272 a.a.
NCBI ID   WP_000149371.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332018..342836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS01540 (I5593_01540) - 332600..332730 (-) 131 Protein_293 hypothetical protein -
  I5593_RS01545 (I5593_01545) rpoZ 332769..333047 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I5593_RS01550 (I5593_01550) gmk 333120..333749 (-) 630 WP_000015937.1 guanylate kinase -
  I5593_RS01555 (I5593_01555) ispH 333872..334822 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I5593_RS01560 (I5593_01560) fimU 334992..335465 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I5593_RS01565 (I5593_01565) pilV 335459..336019 (+) 561 WP_100223341.1 type IV pilus modification protein PilV Machinery gene
  I5593_RS01570 (I5593_01570) pilW 336020..337021 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  I5593_RS01575 (I5593_01575) pilX 337018..337836 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I5593_RS01580 (I5593_01580) pilY1 337848..341702 (+) 3855 WP_000768945.1 PilC/PilY family type IV pilus protein Machinery gene
  I5593_RS01585 (I5593_01585) pilY2 341715..342197 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  I5593_RS01590 (I5593_01590) pilE 342194..342619 (+) 426 WP_000788338.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28802.63 Da        Isoelectric Point: 5.6905

>NTDB_id=509601 I5593_RS01575 WP_000149371.1 337018..337836(+) (pilX) [Acinetobacter baumannii strain ATCC 17961]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLEALQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=509601 I5593_RS01575 WP_000149371.1 337018..337836(+) (pilX) [Acinetobacter baumannii strain ATCC 17961]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAGCTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993