Detailed information NTG0509241

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I5961_RS24150
• Genome accession: NZ_CP065410
• Coordinates: 5273402..5274748 (+)
• Length: 448 a.a.
• NCBI ID: WP_085697522.1
• Uniprot ID: -
• Organism: Pseudomonas sp. IAC-BECa141
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5268402..5279748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5961_RS24125 (I5961_23975)	pgeF	5268605..5269339 (-)	735	WP_227233576.1	peptidoglycan editing factor PgeF	-
I5961_RS24130 (I5961_23980)	rluD	5269336..5270298 (-)	963	WP_011335991.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
I5961_RS24135 (I5961_23985)	-	5270451..5271467 (+)	1017	WP_085697519.1	outer membrane protein assembly factor BamD	-
I5961_RS24140 (I5961_23990)	-	5271593..5271826 (+)	234	WP_085697520.1	PP0621 family protein	-
I5961_RS24145 (I5961_23995)	pilS	5271816..5273405 (+)	1590	WP_085697521.1	ATP-binding protein	Regulator
I5961_RS24150 (I5961_24000)	pilR	5273402..5274748 (+)	1347	WP_085697522.1	sigma-54-dependent transcriptional regulator	Regulator
I5961_RS24155 (I5961_24005)	thiO	5274820..5275920 (-)	1101	WP_085703166.1	glycine oxidase ThiO	-
I5961_RS24160 (I5961_24010)	-	5275978..5276379 (-)	402	WP_039771691.1	type IV pilin protein	-
I5961_RS24165 (I5961_24015)	-	5276395..5279487 (-)	3093	WP_227233578.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50047.48 Da
• Isoelectric Point: 6.8298

>NTDB_id=509241 I5961_RS24150 WP_085697522.1 5273402..5274748(+) (pilR) [Pseudomonas sp. IAC-BECa141]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFALCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLASGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRMIEAEDLRLIEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=509241 I5961_RS24150 WP_085697522.1 5273402..5274748(+) (pilR) [Pseudomonas sp. IAC-BECa141]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCTCAGGCGCTGCTGCATCGCGAAACCTTCGCTCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTCGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCTCTGAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTGGACCTGACGCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTTGGCGACTCACCGCCGATGCGCAACTTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTATATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGTCTGATTCATGAACAGGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGTGGGGCGATTCCTTCAGAGTTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCAGTGGAGGATAAACCGGGGCTGTTCCAGGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGTGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGTTTTCGTCAGG
ACCTGTATTACCGGCTGAACGTGATCGAGTTGCGTGTACCGTCTCTGCGCGAGCGTCGCGAGGACATCGAAGCGCTGGCC
GGCCATATGCTCAAGCGCCTGGCCAGTGGCACCGGGCAACCGGCGGCACGGCTCCATCCTCATGCCCTTGAGGCGCTGAA
AAACTACCGTTTCCCTGGCAACGTGAGGGAACTGGAGAACGTGCTTGAGCGGGCGCACACCCTGTGTGAAAACCGCATGA
TCGAGGCCGAAGATCTACGTCTGATCGAAGGCAACGGCACCGCCGAGGGCGGTATTGCCGATCTCACCCAGATCGACAAC
CTCGAAGACTATCTTGAGAGCGTAGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAGCTGGGCCTGGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	98.884	0.788
pilR	Acinetobacter baumannii strain A118	47.93	100	0.491