Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I5961_RS24145 Genome accession   NZ_CP065410
Coordinates   5271816..5273405 (+) Length   529 a.a.
NCBI ID   WP_085697521.1    Uniprot ID   -
Organism   Pseudomonas sp. IAC-BECa141     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5266816..5278405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5961_RS24125 (I5961_23975) pgeF 5268605..5269339 (-) 735 WP_227233576.1 peptidoglycan editing factor PgeF -
  I5961_RS24130 (I5961_23980) rluD 5269336..5270298 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I5961_RS24135 (I5961_23985) - 5270451..5271467 (+) 1017 WP_085697519.1 outer membrane protein assembly factor BamD -
  I5961_RS24140 (I5961_23990) - 5271593..5271826 (+) 234 WP_085697520.1 PP0621 family protein -
  I5961_RS24145 (I5961_23995) pilS 5271816..5273405 (+) 1590 WP_085697521.1 ATP-binding protein Regulator
  I5961_RS24150 (I5961_24000) pilR 5273402..5274748 (+) 1347 WP_085697522.1 sigma-54-dependent transcriptional regulator Regulator
  I5961_RS24155 (I5961_24005) thiO 5274820..5275920 (-) 1101 WP_085703166.1 glycine oxidase ThiO -
  I5961_RS24160 (I5961_24010) - 5275978..5276379 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58695.40 Da        Isoelectric Point: 6.7820

>NTDB_id=509240 I5961_RS24145 WP_085697521.1 5271816..5273405(+) (pilS) [Pseudomonas sp. IAC-BECa141]
MSAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLNSTNDEWLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAEQRASEVVGLETLNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQTHLEGELID
EHSSALVERLQLWLNNPTLRPQSLKIGGNGVELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVNESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=509240 I5961_RS24145 WP_085697521.1 5271816..5273405(+) (pilS) [Pseudomonas sp. IAC-BECa141]
GTGAGCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGAACTCGACCAACGACGAGTGGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTAGTGGTGTTCCTCGAGAACATCCGCCGCCCCGCCCAGTTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGTGGCGTGTTCTATGCGGCCGGCGGCGTGGCCAGCGCGATCGGCAACCT
GCTGATCGTCTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGTATCGGTTTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGATTATCTCCAGGCCGGCACACTCGGC
GCCCTGTGCTTCGCAGCGTCATTGCTGGTGCAAGGATTGATGCGCCGTCTGGAGGTCAGCGAGAACCTGGCCGAGCAGCG
CGCCAGCGAAGTCGTTGGGCTCGAAACCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAACCACAGCGCCAAGACCCTGCTGGGCCAGACACACCTTGAAGGCGAGTTGATCGAC
GAGCACTCGAGCGCATTGGTCGAGCGCCTGCAACTGTGGCTGAACAACCCGACGCTGCGCCCGCAAAGCCTGAAGATCGG
CGGCAACGGTGTGGAGCTGCAACCGAGCTTCATTGCCCTGGAACAGAGTCCGAACCGCCAGACCCTGGTATTTCTCGAAG
ACCTCGCACAGATCGCCCAGCAGGCCCAGCAATTGAAACTCGCCGCGCTGGGCCGGCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCGGGAGTCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAACGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCACCGCAACGGCTGGATCTCAAGCCGTGGCTGGAGCAGTTCGTCAACGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCACCTGCACATCGGTCCGGGGGACTTTCGCACGCTGATGGATCCTGGCCAGCTCACACAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCATAGCGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGCTGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAGGTGCAGGACAATGGCCCTGGCGTGCCGCTGGATCAGCAGGCTCACCTGTTCGAACCG
TTTTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603