Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ST1A_RS06865 Genome accession   NZ_CP065384
Coordinates   1329657..1331150 (-) Length   497 a.a.
NCBI ID   WP_011681416.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 1A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324657..1336150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS06835 (ST1A_06790) - 1324783..1325160 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  ST1A_RS06840 (ST1A_06795) - 1325165..1325863 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST1A_RS06845 (ST1A_06800) - 1325875..1326660 (+) 786 WP_011681414.1 hypothetical protein -
  ST1A_RS06850 (ST1A_06805) amiF 1326714..1327643 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  ST1A_RS06855 (ST1A_06810) amiE 1327636..1328721 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST1A_RS06860 (ST1A_06815) amiD 1328731..1329657 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST1A_RS06865 (ST1A_06820) amiC 1329657..1331150 (-) 1494 WP_011681416.1 ABC transporter permease Regulator
  ST1A_RS06870 (ST1A_06825) amiA 1331212..1333179 (-) 1968 WP_046206489.1 peptide ABC transporter substrate-binding protein Regulator
  ST1A_RS06875 (ST1A_06830) - 1333535..1334712 (+) 1178 Protein_1300 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55635.50 Da        Isoelectric Point: 10.0972

>NTDB_id=509099 ST1A_RS06865 WP_011681416.1 1329657..1331150(-) (amiC) [Streptococcus thermophilus strain 1A]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAVYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=509099 ST1A_RS06865 WP_011681416.1 1329657..1331150(-) (amiC) [Streptococcus thermophilus strain 1A]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTGTCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

100

100

1
  amiC Streptococcus thermophilus LMG 18311

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97