Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ST1A_RS06850 Genome accession   NZ_CP065384
Coordinates   1326714..1327643 (-) Length   309 a.a.
NCBI ID   WP_011681415.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 1A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321714..1332643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS06825 (ST1A_06780) - 1322993..1323811 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  ST1A_RS06830 (ST1A_06785) - 1323804..1324598 (-) 795 WP_011681412.1 HAD family hydrolase -
  ST1A_RS06835 (ST1A_06790) - 1324783..1325160 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  ST1A_RS06840 (ST1A_06795) - 1325165..1325863 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  ST1A_RS06845 (ST1A_06800) - 1325875..1326660 (+) 786 WP_011681414.1 hypothetical protein -
  ST1A_RS06850 (ST1A_06805) amiF 1326714..1327643 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  ST1A_RS06855 (ST1A_06810) amiE 1327636..1328721 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST1A_RS06860 (ST1A_06815) amiD 1328731..1329657 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST1A_RS06865 (ST1A_06820) amiC 1329657..1331150 (-) 1494 WP_011681416.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=509096 ST1A_RS06850 WP_011681415.1 1326714..1327643(-) (amiF) [Streptococcus thermophilus strain 1A]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=509096 ST1A_RS06850 WP_011681415.1 1326714..1327643(-) (amiF) [Streptococcus thermophilus strain 1A]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

100

1
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977