Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DGO_RS04590 Genome accession   NC_017790
Coordinates   997613..999745 (+) Length   710 a.a.
NCBI ID   WP_083847217.1    Uniprot ID   -
Organism   Deinococcus gobiensis I-0     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 992613..1004745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS20990 (DGo_CA0900) - 992635..994227 (+) 1593 WP_014684310.1 flotillin family protein -
  DGO_RS04570 (DGo_CA0901) - 994350..994766 (+) 417 WP_043801075.1 organic hydroperoxide resistance protein -
  DGO_RS04575 (DGo_CA0902) - 994876..996372 (-) 1497 WP_014684312.1 2-phosphoglycerate kinase -
  DGO_RS04580 (DGo_CA0903) - 996410..997027 (-) 618 WP_014684313.1 TetR/AcrR family transcriptional regulator -
  DGO_RS04585 (DGo_CA0904) comEA 997149..997541 (+) 393 WP_043801077.1 ComEA family DNA-binding protein Machinery gene
  DGO_RS04590 (DGo_CA0905) comEC 997613..999745 (+) 2133 WP_083847217.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DGO_RS04595 - 999855..1000172 (+) 318 WP_264371036.1 RidA family protein -
  DGO_RS04600 (DGo_CA0907) - 1000222..1001244 (+) 1023 WP_043801080.1 SIS domain-containing protein -
  DGO_RS04605 - 1001486..1001902 (+) 417 WP_226991450.1 MerR family transcriptional regulator -
  DGO_RS04610 (DGo_CA0909) - 1001899..1002897 (+) 999 WP_014684319.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 73956.49 Da        Isoelectric Point: 10.5744

>NTDB_id=50881 DGO_RS04590 WP_083847217.1 997613..999745(+) (comEC) [Deinococcus gobiensis I-0]
MGGVLLELGLGWGALVAGLGVGLGLLDRRPLLAALALLGAGLGCGSERLQSGQPDRLAPWVGAQVTLTGDWDGQFLTLRD
PPARLALSPRPPQPPGRLEVSGRLVRPEGRTLPGGFDQAAWLRAQGGVFLPTPRTVLVGARVRSSRPEGGVRGWFRRGLA
AGLSARNAALMTAVELGDRGDIGRENFAEGYAVRDAFNRAGLAHLMALSGQNVALLTGALIFLLSRLGAPTWLRYGLPLA
LLVPYLTVLVSVSPSITRAVVMGMAVLAGLWAGRGRPDVPGTLALAALVCLLLFPLWLLDVGFQLSFLAVLALTLSSRLA
ARLPAGWPHALRLALAATVLAELGTLPVIASTFGQLPLVGLPANLLAEGIMAALVPLGFLAGLLGPLAAPVNLLVAPLAS
LLLWLAEVFGRAPVLGWGQVGIGGLAAYVLAALAGTLWLLGRVRGRAALGTVLACALLSWLPGTLRPARELVFLDVGQGD
ATLLRLPGLTMLVDAGGSVGSDYDVGGRRVLPALRALGVRKLDVAVATHADTDHIEGLAAVLRGLPVGELWIGQRKADDP
VLAAVLAAAHERGVPVREVRRGDEVEASGVKVTVLWPQGAPWSDEDNANSVALRVTDGGWHAALLGDLPDPVEGRIGVGP
LNLLKTAHHGSRFSTDATFLAQTHPKDALISVGARNTYGHPNAAVLERLAAAGVRVWRTDLQGTVRWPLP

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=50881 DGO_RS04590 WP_083847217.1 997613..999745(+) (comEC) [Deinococcus gobiensis I-0]
ATGGGCGGGGTGCTGCTGGAGCTGGGTCTGGGGTGGGGCGCGCTGGTGGCCGGGCTCGGTGTGGGGCTGGGGCTGCTGGA
CCGCCGCCCGTTGCTCGCCGCGCTGGCGCTGCTGGGGGCCGGGCTGGGCTGCGGCAGCGAACGGCTCCAGAGTGGCCAGC
CCGATCGCCTCGCGCCGTGGGTAGGCGCGCAGGTCACGCTGACCGGCGACTGGGACGGCCAGTTCCTGACCCTGCGCGAC
CCGCCGGCGCGGCTGGCCCTCAGCCCCCGGCCCCCGCAGCCGCCGGGCCGGCTGGAGGTGTCGGGCCGCCTCGTGCGCCC
CGAGGGCCGGACGCTGCCGGGCGGTTTCGATCAGGCGGCGTGGCTGCGCGCCCAGGGCGGGGTCTTTCTGCCCACGCCGC
GCACGGTGTTGGTCGGCGCGCGTGTGCGGTCCAGCCGCCCCGAGGGTGGGGTGCGCGGCTGGTTCCGGCGCGGGTTGGCG
GCCGGGCTCTCGGCGCGCAACGCCGCGCTCATGACGGCGGTCGAACTGGGCGACCGGGGCGACATCGGGCGCGAGAACTT
CGCCGAGGGGTACGCGGTGCGCGACGCCTTCAACCGTGCGGGTCTGGCGCATCTCATGGCGCTGTCGGGGCAAAACGTGG
CGCTGCTGACCGGCGCGCTGATCTTCCTGCTCTCGCGTCTGGGGGCGCCCACATGGCTGCGCTACGGGTTGCCGCTCGCG
CTGCTCGTGCCCTACCTGACGGTGCTGGTGAGTGTCTCGCCCAGCATCACCCGCGCGGTCGTCATGGGCATGGCGGTGCT
GGCCGGGCTGTGGGCCGGGCGCGGGCGGCCCGACGTGCCGGGCACGCTGGCGCTCGCGGCGCTCGTGTGCCTGCTGCTCT
TTCCGCTGTGGCTGCTGGACGTGGGCTTTCAGCTCTCGTTCCTGGCGGTGCTCGCGCTGACCCTCTCGTCCCGGCTGGCG
GCGCGGTTGCCGGCGGGCTGGCCCCACGCCCTGCGGCTGGCGCTCGCGGCGACCGTCCTGGCCGAACTGGGCACGCTGCC
GGTCATCGCGTCCACCTTCGGGCAACTGCCGCTCGTGGGCCTGCCCGCCAACCTGCTGGCCGAGGGGATCATGGCCGCGC
TCGTGCCGCTGGGCTTTCTCGCCGGGCTGCTGGGGCCGCTGGCCGCGCCGGTCAACCTGCTCGTGGCGCCGCTCGCCTCG
CTGCTGCTGTGGCTGGCCGAGGTCTTCGGCCGCGCGCCGGTCCTGGGCTGGGGGCAGGTGGGGATCGGGGGGCTGGCGGC
TTACGTGCTCGCGGCGTTGGCGGGCACGCTGTGGCTGCTCGGGCGGGTGCGGGGCCGCGCCGCGCTGGGCACCGTCCTGG
CCTGCGCCCTGCTGAGCTGGCTGCCGGGTACGCTGCGCCCGGCGCGCGAACTCGTCTTTCTGGATGTCGGGCAGGGCGAT
GCCACGCTGCTCCGCCTGCCCGGCCTGACGATGCTGGTGGACGCGGGCGGCTCGGTCGGATCCGACTACGACGTGGGCGG
ACGCCGGGTGCTGCCGGCGCTGCGGGCGCTGGGCGTGCGCAAACTCGACGTGGCGGTCGCCACCCACGCCGACACCGATC
ACATCGAGGGCCTCGCGGCGGTGCTGCGCGGCCTGCCGGTGGGCGAGCTGTGGATCGGGCAGCGCAAGGCGGACGACCCG
GTGCTGGCCGCCGTCCTCGCTGCCGCCCACGAGCGCGGCGTGCCCGTGCGCGAGGTCCGCCGGGGTGACGAGGTGGAGGC
TTCGGGCGTGAAGGTCACGGTGCTGTGGCCGCAGGGCGCGCCCTGGAGTGACGAGGACAACGCCAATTCGGTCGCCCTGC
GCGTCACGGACGGGGGCTGGCACGCGGCGTTGCTGGGCGACCTGCCCGACCCGGTCGAGGGGCGGATCGGGGTCGGGCCA
CTCAATCTTCTTAAAACTGCGCACCACGGCAGCCGTTTCAGCACGGACGCGACCTTTCTGGCCCAGACGCACCCGAAAGA
CGCCCTGATCAGCGTCGGGGCGCGCAACACCTACGGCCACCCCAACGCCGCCGTGCTGGAGCGCCTCGCGGCAGCCGGGG
TGCGGGTGTGGCGCACCGACCTCCAGGGCACGGTGCGCTGGCCGCTGCCCTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(492-629)

Competence protein (Competence)

(193-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

73.054

94.085

0.687
  comA/comEC Thermus thermophilus HB27

42.08

88.028

0.37

Multiple sequence alignment