Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DGO_RS04585 Genome accession   NC_017790
Coordinates   997149..997541 (+) Length   130 a.a.
NCBI ID   WP_043801077.1    Uniprot ID   -
Organism   Deinococcus gobiensis I-0     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 992149..1002541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS20990 (DGo_CA0900) - 992635..994227 (+) 1593 WP_014684310.1 flotillin family protein -
  DGO_RS04570 (DGo_CA0901) - 994350..994766 (+) 417 WP_043801075.1 organic hydroperoxide resistance protein -
  DGO_RS04575 (DGo_CA0902) - 994876..996372 (-) 1497 WP_014684312.1 2-phosphoglycerate kinase -
  DGO_RS04580 (DGo_CA0903) - 996410..997027 (-) 618 WP_014684313.1 TetR/AcrR family transcriptional regulator -
  DGO_RS04585 (DGo_CA0904) comEA 997149..997541 (+) 393 WP_043801077.1 ComEA family DNA-binding protein Machinery gene
  DGO_RS04590 (DGo_CA0905) comEC 997613..999745 (+) 2133 WP_083847217.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DGO_RS04595 - 999855..1000172 (+) 318 WP_264371036.1 RidA family protein -
  DGO_RS04600 (DGo_CA0907) - 1000222..1001244 (+) 1023 WP_043801080.1 SIS domain-containing protein -
  DGO_RS04605 - 1001486..1001902 (+) 417 WP_226991450.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 13384.64 Da        Isoelectric Point: 11.6705

>NTDB_id=50880 DGO_RS04585 WP_043801077.1 997149..997541(+) (comEA) [Deinococcus gobiensis I-0]
MKPAEPFWTLALALGTLGIAGLTLGPALWPRPHAPQVMHAAPAPVSAAEAGAGAGPPTYATTASVRPLISGRVNLNTATR
EQLEALPKVGPALAARLVAGRPYRTLADLDRVRGVGPSTLRLLAPLVSFQ

Nucleotide


Download         Length: 393 bp        

>NTDB_id=50880 DGO_RS04585 WP_043801077.1 997149..997541(+) (comEA) [Deinococcus gobiensis I-0]
ATGAAGCCCGCCGAGCCGTTCTGGACCCTGGCCCTCGCCCTGGGCACCCTGGGCATCGCGGGCCTGACGCTGGGGCCGGC
GTTGTGGCCGCGCCCCCACGCGCCGCAGGTCATGCACGCCGCGCCCGCGCCGGTTTCCGCTGCGGAGGCTGGTGCCGGTG
CCGGGCCGCCGACCTACGCGACGACCGCCAGTGTGCGCCCGCTGATCAGCGGCCGGGTCAATCTGAACACGGCCACCAGG
GAGCAGCTCGAAGCTCTGCCCAAGGTCGGCCCCGCGCTGGCGGCCCGCCTCGTCGCGGGGCGGCCTTACCGCACGCTGGC
CGATCTCGACCGGGTGCGCGGGGTGGGGCCCTCGACCCTGCGGCTGCTCGCGCCGCTGGTCTCGTTTCAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(72-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.341

99.231

0.638

Multiple sequence alignment