Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGFG_RS11470 Genome accession   NC_022240
Coordinates   2110056..2110199 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105056..2115199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS11455 (NGFG_01822) pilA 2106347..2107600 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  NGFG_RS15335 - 2107636..2107854 (-) 219 WP_157778910.1 hypothetical protein -
  NGFG_RS11460 (NGFG_02483) - 2107868..2108541 (-) 674 Protein_2146 opacity family porin -
  NGFG_RS11465 (NGFG_01821) pilE 2109185..2109685 (-) 501 WP_017147169.1 pilin Machinery gene
  NGFG_RS11470 pilE 2110056..2110199 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  NGFG_RS11475 (NGFG_01819) - 2110458..2110841 (-) 384 Protein_2149 pilin -
  NGFG_RS11480 (NGFG_01818) pilE 2110959..2111390 (-) 432 WP_003696281.1 pilin Machinery gene
  NGFG_RS11485 (NGFG_01817) lpxC 2111496..2112419 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NGFG_RS11490 (NGFG_02216) pilE 2112950..2113369 (-) 420 WP_017147167.1 pilin Machinery gene
  NGFG_RS11495 (NGFG_02216) - 2113465..2113884 (-) 420 Protein_2153 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=50833 NGFG_RS11470 WP_003691943.1 2110056..2110199(-) (pilE) [Neisseria gonorrhoeae MS11]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=50833 NGFG_RS11470 WP_003691943.1 2110056..2110199(-) (pilE) [Neisseria gonorrhoeae MS11]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447

Multiple sequence alignment