Detailed information NTG0508275

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IT970_RS13180
• Genome accession: NZ_CP065231
• Coordinates: 2921211..2922107 (+)
• Length: 298 a.a.
• NCBI ID: WP_118844623.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. A41-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2916211..2927107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IT970_RS13155 (IT970_13150)	nadC	2916838..2917686 (+)	849	WP_074988951.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IT970_RS13160 (IT970_13155)	-	2918184..2918624 (+)	441	WP_118844620.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
IT970_RS16105 (IT970_13160)	-	2918643..2919068 (+)	426	WP_118844621.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
IT970_RS13170 (IT970_13165)	-	2919065..2919673 (-)	609	WP_118844822.1	fimbrial assembly protein	-
IT970_RS13175 (IT970_13170)	pilC	2919805..2921031 (+)	1227	WP_118844622.1	type II secretion system F family protein	Machinery gene
IT970_RS13180 (IT970_13175)	pilD	2921211..2922107 (+)	897	WP_118844623.1	A24 family peptidase	Machinery gene
IT970_RS13185 (IT970_13180)	coaE	2922110..2922706 (+)	597	WP_118844624.1	dephospho-CoA kinase	-
IT970_RS13190 (IT970_13185)	pilB	2922881..2924557 (+)	1677	WP_118844625.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IT970_RS13195 (IT970_13190)	yacG	2924625..2924858 (+)	234	WP_036965896.1	DNA gyrase inhibitor YacG	-
IT970_RS13200 (IT970_13195)	-	2924920..2925450 (-)	531	WP_118844626.1	Spy/CpxP family protein refolding chaperone	-
IT970_RS13205 (IT970_13200)	-	2925622..2926311 (+)	690	WP_118844627.1	response regulator	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 32999.41 Da
• Isoelectric Point: 5.6507

>NTDB_id=508275 IT970_RS13180 WP_118844623.1 2921211..2922107(+) (pilD) [Pseudoalteromonas sp. A41-2]
MQNFFLDIATVMQSQQWFYLLTVGLVSLCIGSFLNVVIYRLPLMMKQEWQSECRLLLADELTINHTEEPTPFNLVTPNST
CPQCKAPIKIWQNIPVISWLILKGRCASCKAPISVRYPIVEMLTASLSLAVAVVFGASELALLYIVITWVLIALTFIDID
HMLLPDQLTLPLVWLALIAAVMNITIAPSDAIIGAAIGYLSLWSVYWLFKLATGKEGMGYGDFKLLAVFGSLLGWQAILT
IVLLSSVVGALIGMLQIIIQGKDKTTPIPFGPYLAIAGWVTLLWGEQIQTTYFSYLGH

Nucleotide

• Length: 897 bp

>NTDB_id=508275 IT970_RS13180 WP_118844623.1 2921211..2922107(+) (pilD) [Pseudoalteromonas sp. A41-2]
ATGCAAAATTTTTTCCTTGATATAGCCACCGTGATGCAATCTCAACAGTGGTTTTATTTGTTAACTGTAGGACTTGTAAG
TCTGTGTATTGGTAGCTTTTTAAATGTCGTTATTTACAGGCTACCACTGATGATGAAACAAGAATGGCAATCAGAGTGCC
GTCTGTTATTGGCCGATGAGCTAACAATTAACCATACTGAAGAGCCTACTCCCTTTAATTTAGTCACACCCAATTCAACC
TGCCCACAATGTAAGGCACCGATTAAGATTTGGCAGAACATTCCTGTTATCAGCTGGTTAATACTCAAAGGCCGCTGTGC
AAGTTGTAAGGCACCAATTTCTGTTCGCTACCCCATTGTTGAAATGCTAACAGCCAGCTTAAGTCTCGCGGTTGCAGTTG
TATTTGGCGCATCTGAACTTGCCTTACTTTATATTGTAATCACATGGGTGCTCATTGCGCTTACGTTCATTGATATTGAT
CATATGCTGCTGCCTGACCAACTTACCTTACCGCTTGTTTGGCTTGCATTGATTGCAGCCGTGATGAACATCACAATCGC
CCCTTCTGATGCGATTATTGGCGCTGCAATTGGCTATTTAAGTTTATGGAGTGTGTATTGGCTCTTTAAACTTGCTACTG
GAAAAGAAGGCATGGGGTATGGCGATTTTAAATTACTCGCGGTATTTGGATCGTTACTTGGTTGGCAGGCTATTTTAACT
ATCGTGCTGCTTTCGAGTGTCGTTGGCGCTCTTATTGGTATGCTGCAAATTATTATTCAAGGCAAAGATAAAACCACGCC
TATTCCCTTTGGCCCCTACCTTGCGATAGCCGGTTGGGTAACCTTATTGTGGGGTGAGCAAATTCAAACAACCTATTTTA
GCTATTTAGGTCATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-135)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.355	96.309	0.523
pilD	Acinetobacter nosocomialis M2	54.007	96.309	0.52
pilD	Vibrio campbellii strain DS40M4	52.797	95.973	0.507
pilD	Vibrio cholerae strain A1552	53.047	93.624	0.497
pilD	Neisseria gonorrhoeae MS11	41.606	91.946	0.383