Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   I3X05_RS04940 Genome accession   NZ_CP065217
Coordinates   1089306..1091180 (+) Length   624 a.a.
NCBI ID   WP_226972338.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 20-VB00237     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1084306..1096180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS04915 (I3X05_04900) - 1084321..1084890 (-) 570 WP_337970983.1 PilZ domain-containing protein -
  I3X05_RS04920 (I3X05_04905) lolC 1085128..1086333 (+) 1206 WP_082069532.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  I3X05_RS04925 (I3X05_04910) lolD 1086326..1087021 (+) 696 WP_045568994.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  I3X05_RS04930 (I3X05_04915) lolE 1087021..1088265 (+) 1245 WP_045568993.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  I3X05_RS04935 (I3X05_04920) - 1088407..1088916 (-) 510 WP_039445689.1 DUF2062 domain-containing protein -
  I3X05_RS04940 (I3X05_04925) comEC 1089306..1091180 (+) 1875 WP_226972338.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I3X05_RS04945 (I3X05_04930) msbA 1091212..1092963 (+) 1752 WP_045568991.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  I3X05_RS04950 (I3X05_04935) lpxK 1092963..1093970 (+) 1008 WP_193157693.1 tetraacyldisaccharide 4'-kinase -
  I3X05_RS04955 (I3X05_04940) - 1093951..1094130 (+) 180 WP_039425205.1 Trm112 family protein -
  I3X05_RS04960 (I3X05_04945) kdsB 1094130..1094888 (+) 759 WP_193157692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I3X05_RS04965 (I3X05_04950) - 1095001..1095789 (+) 789 WP_193157691.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70230.92 Da        Isoelectric Point: 8.4752

>NTDB_id=508192 I3X05_RS04940 WP_226972338.1 1089306..1091180(+) (comEC) [Vibrio navarrensis strain 20-VB00237]
MLTQNDVFAGWVNIKPIYGLLNQAGFDSETFALSQQVLARATLDPQHSWRVTSAYSVRLALIEKVSLQLAEASHSALLMA
LSFGVRDQIEAEQWQQLKQSGLIHLLSISGLHIGMAFGCGYWLGHWMRAGQRPLLFVPTMLGLVFAWAYAWLAGFTLPTQ
RALIFCLLMASFSLMNWQISRWSTLLWVLACCLVLSPFSPLSSSFWLSFLAVGAVFLTINRGHFHASWRKRVTNLLLTQA
LLLLFLAPVTGHFFSGFSFAALIYNLVFIPWFTLAVVPLVLAGLLFSALSLSSVATLIWQLADWSLQPLSMLLPYARHGW
WPLTDGQIAVITLLALLILYGRLFTPSFALTVFGISIAMTIGYRQQGEVRIDLLDVGHGLAVLIEKNDHLLLYDTGKGWF
DGSIAQQVIEPVMLKRGHRGLDGLILSHLDNDHAGGKAYVEAMLSPKWRMSSSQQEHYLPCLRGEQHEWQGMKLEVLWPP
KLVKRAYNPHSCVIRLSDWENQFSILLTGDIDAVAEWILAREPEKVRSDIMLVPHHGSLTSSSPDFVAAVTPQLALASLA
KGNQWGMPRKEVLRTYQQHEVRWLDTGEEGQITVLVHQGRWSVKTLRSNSLQPWYRQMLRNQVE

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=508192 I3X05_RS04940 WP_226972338.1 1089306..1091180(+) (comEC) [Vibrio navarrensis strain 20-VB00237]
TTGCTCACTCAGAATGATGTCTTTGCAGGCTGGGTAAACATCAAACCCATTTATGGACTGTTGAACCAAGCTGGATTTGA
TAGTGAAACGTTCGCTCTCAGCCAACAAGTCTTAGCCAGAGCGACACTCGATCCACAGCATTCGTGGCGGGTTACTTCGG
CCTACTCGGTAAGGCTGGCGCTGATTGAAAAAGTCTCCCTGCAATTGGCGGAGGCATCGCACTCAGCTTTGCTGATGGCA
CTCAGTTTTGGCGTGCGTGACCAGATCGAAGCTGAACAGTGGCAGCAGCTCAAACAGAGCGGATTGATTCATCTTCTTTC
GATCTCTGGTCTACATATTGGTATGGCGTTTGGATGTGGCTATTGGCTCGGACATTGGATGCGGGCAGGGCAAAGACCGC
TTCTTTTCGTGCCGACCATGCTCGGTTTGGTGTTTGCTTGGGCTTATGCTTGGTTGGCCGGCTTTACCCTACCGACTCAG
CGAGCGCTGATTTTTTGTCTCTTGATGGCATCGTTTTCGCTGATGAACTGGCAGATAAGTCGTTGGAGTACCTTACTTTG
GGTGCTGGCATGCTGTCTGGTGTTATCGCCTTTTTCCCCGCTATCTTCCAGTTTCTGGCTATCTTTTCTCGCCGTCGGTG
CCGTTTTTCTCACCATCAACCGAGGCCATTTTCATGCATCATGGCGAAAAAGAGTAACAAACCTGCTACTCACGCAAGCC
TTGTTACTACTCTTTCTCGCGCCAGTGACTGGGCACTTCTTTTCCGGTTTTAGCTTTGCAGCGCTGATATACAACTTAGT
GTTTATCCCGTGGTTTACGCTGGCGGTGGTTCCTTTGGTGTTGGCTGGTTTGTTGTTTTCGGCCTTGTCTTTGTCAAGCG
TCGCCACGCTCATTTGGCAACTGGCAGATTGGTCTTTACAACCGCTCAGCATGCTATTGCCTTATGCACGTCACGGCTGG
TGGCCACTCACCGACGGGCAGATCGCCGTGATTACCCTTTTGGCTCTGCTGATCCTGTACGGACGCCTGTTTACGCCCAG
TTTTGCGTTGACTGTATTTGGGATAAGCATTGCGATGACGATAGGTTATCGCCAGCAGGGTGAGGTCCGTATTGATCTAT
TGGATGTCGGCCATGGTTTGGCGGTATTGATTGAGAAAAATGATCACTTGCTGCTTTATGATACTGGCAAAGGTTGGTTT
GACGGCAGTATTGCTCAGCAGGTCATTGAACCGGTGATGCTTAAACGGGGGCATCGCGGCTTGGACGGTTTAATTCTTAG
CCACCTAGACAATGACCACGCTGGAGGGAAAGCGTATGTCGAGGCCATGCTATCTCCGAAATGGCGCATGAGCAGTTCGC
AGCAAGAGCACTATTTACCCTGTCTTCGCGGTGAGCAGCATGAATGGCAAGGGATGAAGCTTGAAGTACTGTGGCCACCG
AAACTGGTTAAACGGGCCTATAACCCTCACTCGTGCGTAATTCGGCTCAGCGATTGGGAAAATCAGTTTTCAATCTTACT
CACGGGGGACATTGATGCCGTTGCCGAGTGGATCTTGGCTCGAGAGCCTGAAAAGGTGCGAAGCGATATTATGTTGGTTC
CGCATCATGGCAGTTTAACCTCGTCCTCACCCGATTTTGTCGCTGCCGTAACGCCGCAGTTGGCGTTGGCTTCTCTTGCT
AAAGGCAACCAGTGGGGCATGCCGAGAAAAGAGGTGTTACGCACTTATCAGCAACACGAGGTACGCTGGTTAGATACCGG
AGAAGAAGGGCAGATTACCGTTTTGGTTCACCAAGGTCGTTGGTCAGTAAAAACGCTGCGTAGCAATAGTTTGCAGCCTT
GGTATAGGCAGATGCTACGGAACCAAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(81-340)

Metallo-beta-lactamase superfamily (Lactamase_B)

(376-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

48.089

100

0.484
  comEC Vibrio campbellii strain DS40M4

46.203

100

0.468
  comEC Vibrio cholerae strain A1552

43.651

100

0.441