Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I3X02_RS25370 Genome accession   NZ_CP065213
Coordinates   4879849..4880211 (-) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia megaterium strain HGS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4874849..4885211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X02_RS25360 - 4875338..4877968 (+) 2631 WP_115655074.1 DEAD/DEAH box helicase -
  I3X02_RS25365 - 4878266..4879312 (+) 1047 WP_209368051.1 C40 family peptidase -
  I3X02_RS25370 ssbB 4879849..4880211 (-) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  I3X02_RS25375 - 4880308..4880745 (+) 438 WP_014457773.1 YwpF-like family protein -
  I3X02_RS25380 - 4881269..4881691 (+) 423 WP_014457772.1 helix-turn-helix transcriptional regulator -
  I3X02_RS25385 fabZ 4881720..4882154 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I3X02_RS25390 - 4882238..4883059 (-) 822 WP_209368053.1 flagellar hook-basal body protein -
  I3X02_RS25395 - 4883083..4883907 (-) 825 WP_014457769.1 flagellar hook-basal body protein -
  I3X02_RS25400 - 4884018..4885019 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=508172 I3X02_RS25370 WP_014457774.1 4879849..4880211(-) (ssbB) [Priestia megaterium strain HGS7]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=508172 I3X02_RS25370 WP_014457774.1 4879849..4880211(-) (ssbB) [Priestia megaterium strain HGS7]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508