Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I4Q40_RS00040 Genome accession   NZ_CP065211
Coordinates   9642..10154 (+) Length   170 a.a.
NCBI ID   WP_156272411.1    Uniprot ID   A0A7W2AIZ5
Organism   Enterococcus lactis strain KCTC 21015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4642..15154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q40_RS00030 (I4Q40_00030) gyrA 6207..8678 (+) 2472 WP_156272365.1 DNA gyrase subunit A -
  I4Q40_RS00035 (I4Q40_00035) rpsF 9292..9591 (+) 300 WP_156272409.1 30S ribosomal protein S6 -
  I4Q40_RS00040 (I4Q40_00040) ssb 9642..10154 (+) 513 WP_156272411.1 single-stranded DNA-binding protein Machinery gene
  I4Q40_RS00045 (I4Q40_00045) rpsR 10180..10416 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  I4Q40_RS00050 (I4Q40_00050) - 10559..12532 (+) 1974 WP_002315475.1 DHH family phosphoesterase -
  I4Q40_RS00055 (I4Q40_00055) rplI 12538..12990 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  I4Q40_RS00060 (I4Q40_00060) dnaB 13265..14632 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18424.96 Da        Isoelectric Point: 4.6742

>NTDB_id=508080 I4Q40_RS00040 WP_156272411.1 9642..10154(+) (ssb) [Enterococcus lactis strain KCTC 21015]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADSFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=508080 I4Q40_RS00040 WP_156272411.1 9642..10154(+) (ssb) [Enterococcus lactis strain KCTC 21015]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTAGCTGACAGCTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2AIZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.612
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388