Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ITG08_RS07515 Genome accession   NZ_CP065206
Coordinates   1613935..1614582 (-) Length   215 a.a.
NCBI ID   WP_016767798.1    Uniprot ID   A0AAN0LZQ5
Organism   Vibrio cyclitrophicus strain ED653     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608935..1619582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS07505 (ITG08_07495) uvrA 1609890..1612721 (-) 2832 WP_010434318.1 excinuclease ABC subunit UvrA -
  ITG08_RS07510 (ITG08_07500) galU 1612905..1613777 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ITG08_RS07515 (ITG08_07505) qstR 1613935..1614582 (-) 648 WP_016767798.1 LuxR C-terminal-related transcriptional regulator Regulator
  ITG08_RS07520 (ITG08_07510) - 1615002..1616162 (+) 1161 WP_248370655.1 tyrosine-type recombinase/integrase -
  ITG08_RS07525 (ITG08_07515) - 1616162..1618285 (+) 2124 WP_248370657.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25029.27 Da        Isoelectric Point: 9.9854

>NTDB_id=508019 ITG08_RS07515 WP_016767798.1 1613935..1614582(-) (qstR) [Vibrio cyclitrophicus strain ED653]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=508019 ITG08_RS07515 WP_016767798.1 1613935..1614582(-) (qstR) [Vibrio cyclitrophicus strain ED653]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488