Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I5R27_RS17265 Genome accession   NZ_CP065202
Coordinates   3797881..3800097 (-) Length   738 a.a.
NCBI ID   WP_196882785.1    Uniprot ID   A0A9Q6VJS1
Organism   Pseudomonas fragi strain A13BB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792881..3805097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5R27_RS17230 (I5R27_17225) - 3793151..3793762 (-) 612 WP_196882783.1 hypothetical protein -
  I5R27_RS17235 (I5R27_17230) murB 3793778..3794797 (-) 1020 WP_083369823.1 UDP-N-acetylmuramate dehydrogenase -
  I5R27_RS17240 (I5R27_17235) kdsB 3794794..3795558 (-) 765 WP_016779940.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I5R27_RS17245 (I5R27_17240) - 3795555..3795740 (-) 186 WP_086796064.1 Trm112 family protein -
  I5R27_RS17250 (I5R27_17245) lpxK 3795762..3796772 (-) 1011 WP_086796063.1 tetraacyldisaccharide 4'-kinase -
  I5R27_RS17255 (I5R27_17250) - 3796772..3797200 (-) 429 WP_016779937.1 ExbD/TolR family protein -
  I5R27_RS17260 (I5R27_17255) exbB 3797197..3797832 (-) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I5R27_RS17265 (I5R27_17260) comA 3797881..3800097 (-) 2217 WP_196882785.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I5R27_RS17270 (I5R27_17265) - 3800232..3800747 (+) 516 WP_016779933.1 DUF2062 domain-containing protein -
  I5R27_RS17275 (I5R27_17270) - 3800793..3801572 (-) 780 WP_016779932.1 ABC transporter permease -
  I5R27_RS17280 (I5R27_17275) - 3801569..3802501 (-) 933 WP_016779931.1 ABC transporter ATP-binding protein -
  I5R27_RS17285 (I5R27_17280) - 3802635..3803261 (-) 627 WP_196882787.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79843.86 Da        Isoelectric Point: 10.2383

>NTDB_id=507957 I5R27_RS17265 WP_196882785.1 3797881..3800097(-) (comA) [Pseudomonas fragi strain A13BB]
MYTGMLALAAGLMTLRFLPVLPSVGWLLLMLVAGLLLLACRAWPLGLFVLGLSWACVQGQRALDDRLADSFDGRTLWVEG
RVIGLPQQSGKSVRFELQGAKSRHGALPATIRLSWYGGPSVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGQLQQAASHAWRDGLRQRLSGVDTQGRGAWLAALVLGDGSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPGFLPWLPWACALAFIGATGYGLLAGFEVPVQRACAMLGLVLAWRLWFRQLGVWLPFLLALNAVLIVEPL
ASLRAGLWLSFSAVAVLLFTFSGRLGAWGWRAMWLRPQGLIALGLFPVLWILDLPISLTGPLANLLAVPWISLAVLPTAL
LGTLLLPVPWLGENLLWLSGGLIDVLVQVLSQLADVFKPWLPASVPVYLWLLSAGGVLILLLPAGLVLRPLGWPLVLLAL
FAPREPIPHGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKFGDLDQGERVVVPVLRSLGVGALDLMLLSHADADHAGGA
LAVQRAINVARVVSGDVPGLAPQLRAQPCVSGHSWEWDGVRFALWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RELLKSPLAVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYQALGVQVLDSAEQGAVKFRL
GVSGKAESMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=507957 I5R27_RS17265 WP_196882785.1 3797881..3800097(-) (comA) [Pseudomonas fragi strain A13BB]
ATGTACACAGGGATGTTGGCGCTGGCAGCGGGCCTGATGACGCTGCGCTTTTTACCGGTTTTACCGTCTGTCGGGTGGTT
GCTGCTGATGCTGGTGGCGGGGCTGTTGCTGTTGGCCTGCAGGGCCTGGCCGCTGGGGCTTTTTGTGCTTGGGTTGAGCT
GGGCCTGCGTGCAGGGGCAAAGGGCGCTGGATGATCGTCTGGCGGATTCATTCGACGGGCGTACCCTCTGGGTTGAGGGG
CGTGTTATCGGGTTGCCGCAGCAGTCCGGCAAGTCCGTTCGTTTTGAGTTGCAAGGGGCAAAGTCGCGGCACGGCGCGCT
GCCCGCGACCATCAGGCTGAGCTGGTATGGCGGGCCCTCCGTGAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAACTCA
AGAAGCCCAAGGGCTTGCTCAACCCTCAGGGGTTTGATTTTGAAGCCTGGTTACTGGCGCAGCGCATCGGAGCCACCGGC
ACGGTCAAGCAGGGGCAACTGCAGCAAGCCGCCAGCCACGCCTGGCGTGACGGCTTGCGCCAACGCCTGTCAGGGGTTGA
TACCCAAGGCCGGGGCGCCTGGCTGGCAGCGCTGGTCCTGGGTGACGGGTCGGGCTTGAGCCGGGATGACTGGGCGCTGC
TGCAAGCGACCGGCACGGTGCATTTGCTGGTGATCTCGGGGCAGCATATCGGCCTGTTTGCCGGCTTGATCTACGGGTTG
GTCGCCCTGCTGGCGCGTTACGGGCTGTGGCCAGGCTTTTTGCCGTGGCTGCCCTGGGCGTGTGCCCTGGCGTTTATCGG
CGCCACAGGCTATGGCCTGCTGGCTGGTTTTGAAGTGCCAGTGCAGCGGGCATGCGCGATGCTCGGTCTGGTGCTGGCAT
GGCGTTTGTGGTTTCGCCAGCTGGGGGTGTGGCTGCCTTTTTTGCTGGCGCTCAATGCGGTGTTGATCGTCGAACCGCTG
GCGAGTTTGCGGGCGGGGTTGTGGTTGTCATTCAGTGCCGTGGCGGTGCTGCTTTTTACCTTCAGCGGCCGTTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGCTGCGCCCTCAGGGCCTGATAGCCCTGGGCTTGTTCCCGGTGCTGTGGATCCTCGATT
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGGCGGTGTTGCCCACGGCACTG
CTGGGGACCTTGCTGCTGCCTGTGCCCTGGCTGGGGGAAAACCTGCTGTGGTTATCGGGTGGCCTGATTGATGTGCTGGT
GCAGGTGCTGAGTCAGCTGGCCGATGTGTTCAAGCCCTGGTTGCCCGCATCGGTGCCGGTTTACCTTTGGTTGTTGAGTG
CTGGTGGAGTGCTGATCCTGTTGTTGCCGGCGGGGTTGGTGTTGCGGCCGTTGGGCTGGCCGCTGGTGCTGCTGGCGCTG
TTCGCGCCCCGGGAGCCAATCCCCCACGGTCAGGTCGAGGTGCTGCAGCTGGATGTCGGCCAGGGCCTGGCCATTGCTTT
GCGTACCCGCAATCACACGCTGTTGTATGACGCTGGCCCCAAGTTCGGCGATCTGGATCAGGGTGAGCGGGTGGTGGTGC
CGGTTTTGCGCTCTCTGGGCGTTGGTGCGCTGGATTTGATGCTGCTCAGCCATGCTGACGCCGATCATGCGGGTGGCGCG
CTGGCAGTGCAGCGCGCGATCAACGTGGCGCGGGTGGTCAGCGGTGATGTACCTGGGCTGGCGCCGCAGTTGCGGGCGCA
ACCCTGTGTCAGTGGCCACAGCTGGGAGTGGGACGGGGTGCGGTTTGCACTCTGGCAGTGGGCGGGGGCGAGCGACAGTA
ATCAAAAGTCCTGCGTGCTACAGGTGCAGGCTGGCGATGAACGGTTGCTGCTGACCGGGGATATCGACGCCAGGGCCGAG
CGTGAGTTGCTGAAAAGCCCGTTGGCCGTGCCCACCCGTTGGTTGCAGGCCCCGCATCACGGCAGCAAGACCTCGTCGTC
GATGGTGTTTCTCAAGGCGCTGGCGCCTGAAATCGTGCTGATATCCCGGGGGCATGGTAATAGCTTCGGTCATCCCCATC
CGCAGGTGATGGCCCGGTATCAGGCGCTGGGCGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAATTTCGTCTC
GGGGTGTCCGGCAAGGCTGAAAGCATGCGTGACCAACGCCGCTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.832

97.425

0.573
  comA Ralstonia pseudosolanacearum GMI1000

34.231

100

0.362