Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I5R27_RS17260 Genome accession   NZ_CP065202
Coordinates   3797197..3797832 (-) Length   211 a.a.
NCBI ID   WP_029611293.1    Uniprot ID   -
Organism   Pseudomonas fragi strain A13BB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792197..3802832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5R27_RS17230 (I5R27_17225) - 3793151..3793762 (-) 612 WP_196882783.1 hypothetical protein -
  I5R27_RS17235 (I5R27_17230) murB 3793778..3794797 (-) 1020 WP_083369823.1 UDP-N-acetylmuramate dehydrogenase -
  I5R27_RS17240 (I5R27_17235) kdsB 3794794..3795558 (-) 765 WP_016779940.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I5R27_RS17245 (I5R27_17240) - 3795555..3795740 (-) 186 WP_086796064.1 Trm112 family protein -
  I5R27_RS17250 (I5R27_17245) lpxK 3795762..3796772 (-) 1011 WP_086796063.1 tetraacyldisaccharide 4'-kinase -
  I5R27_RS17255 (I5R27_17250) - 3796772..3797200 (-) 429 WP_016779937.1 ExbD/TolR family protein -
  I5R27_RS17260 (I5R27_17255) exbB 3797197..3797832 (-) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I5R27_RS17265 (I5R27_17260) comA 3797881..3800097 (-) 2217 WP_196882785.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I5R27_RS17270 (I5R27_17265) - 3800232..3800747 (+) 516 WP_016779933.1 DUF2062 domain-containing protein -
  I5R27_RS17275 (I5R27_17270) - 3800793..3801572 (-) 780 WP_016779932.1 ABC transporter permease -
  I5R27_RS17280 (I5R27_17275) - 3801569..3802501 (-) 933 WP_016779931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23020.24 Da        Isoelectric Point: 6.8765

>NTDB_id=507956 I5R27_RS17260 WP_029611293.1 3797197..3797832(-) (exbB) [Pseudomonas fragi strain A13BB]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=507956 I5R27_RS17260 WP_029611293.1 3797197..3797832(-) (exbB) [Pseudomonas fragi strain A13BB]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGACTCACCCCTGGGGGAGATTCTCGCTGCCGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAGGCCGCCGCGCGGGTCATTCACGAGCTTGAGCGCTACCT
CAATACCCTGGGCACCATCGCGGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCCATCCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACGGCT
GCAGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAGCGTCGCGTTGACGACCTGGTGGTCGGCAT
GGAACAGGAAGCAATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844