Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2439_RS01255 Genome accession   NZ_CP065191
Coordinates   241928..243289 (+) Length   453 a.a.
NCBI ID   WP_196820080.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 236928..248289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS01240 (HIEAAJJG_00245) - 238470..240266 (+) 1797 WP_196819803.1 ABC transporter ATP-binding protein -
  I2439_RS01245 (HIEAAJJG_00246) - 240417..241184 (+) 768 WP_196819804.1 epoxyqueuosine reductase QueH -
  I2439_RS01250 (HIEAAJJG_00247) - 241416..241862 (+) 447 WP_012514883.1 dUTP diphosphatase -
  I2439_RS01255 (HIEAAJJG_00248) radA 241928..243289 (+) 1362 WP_196820080.1 DNA repair protein RadA Machinery gene
  I2439_RS01260 (HIEAAJJG_00249) - 243450..243728 (-) 279 WP_196819805.1 hypothetical protein -
  I2439_RS01265 (HIEAAJJG_00250) - 244058..244564 (+) 507 WP_196819806.1 carbonic anhydrase -
  I2439_RS01270 (HIEAAJJG_00251) - 244692..245405 (+) 714 WP_037580456.1 TIGR00266 family protein -
  I2439_RS01275 (HIEAAJJG_00252) - 246052..247449 (-) 1398 WP_196819791.1 ISNCY-like element ISSeq2 family transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49229.64 Da        Isoelectric Point: 6.7542

>NTDB_id=507808 I2439_RS01255 WP_196820080.1 241928..243289(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPLMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRVNEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=507808 I2439_RS01255 WP_196820080.1 241928..243289(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGGTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCTGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACCGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCAATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCTGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCTTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTCCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAACGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGACGCCTACCTCAAATCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGCTACAAGGAAAAACCGACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGGTCAATGAAGCTGCTAAGCTTGGTTTTACCAAGCTTTACGCGCCTAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAGGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTTTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.106

100

0.841
  radA Streptococcus pneumoniae D39

84.106

100

0.841
  radA Streptococcus pneumoniae R6

84.106

100

0.841
  radA Streptococcus pneumoniae TIGR4

84.106

100

0.841
  radA Streptococcus mitis NCTC 12261

83.664

100

0.837
  radA Streptococcus mitis SK321

83.664

100

0.837
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614