Detailed information NTG0507807

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2439_RS00850
• Genome accession: NZ_CP065191
• Coordinates: 148893..151334 (+)
• Length: 813 a.a.
• NCBI ID: WP_115250230.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ46
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 143893..156334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2439_RS00820 (HIEAAJJG_00165)	ahpF	144232..145764 (-)	1533	WP_111689774.1	alkyl hydroperoxide reductase subunit F	-
I2439_RS00825 (HIEAAJJG_00166)	ahpC	145785..146345 (-)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
I2439_RS00835 (HIEAAJJG_00168)	-	146962..147678 (+)	717	WP_196819775.1	exotoxin beta-grasp domain-containing protein	-
I2439_RS00840 (HIEAAJJG_00169)	-	148057..148260 (+)	204	WP_012514799.1	cold-shock protein	-
I2439_RS00845 (HIEAAJJG_00170)	-	148432..148893 (+)	462	WP_196819776.1	CtsR family transcriptional regulator	-
I2439_RS00850 (HIEAAJJG_00171)	clpC	148893..151334 (+)	2442	WP_115250230.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2439_RS00855	-	151682..151786 (-)	105	WP_037580603.1	putative holin-like toxin	-
I2439_RS00860 (HIEAAJJG_00172)	-	152108..152539 (+)	432	WP_014622158.1	hypothetical protein	-
I2439_RS00865 (HIEAAJJG_00173)	-	152541..153830 (+)	1290	WP_196819777.1	hypothetical protein	-
I2439_RS00870 (HIEAAJJG_00174)	-	153812..154204 (+)	393	WP_196819778.1	hypothetical protein	-
I2439_RS00875 (HIEAAJJG_00175)	-	154185..154475 (+)	291	WP_012677258.1	hypothetical protein	-
I2439_RS00880 (HIEAAJJG_00176)	groES	154774..155061 (+)	288	WP_037580584.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90437.33 Da
• Isoelectric Point: 6.5233

>NTDB_id=507807 I2439_RS00850 WP_115250230.1 148893..151334(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKTKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGVIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKRLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMVKVSAILAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=507807 I2439_RS00850 WP_115250230.1 148893..151334(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCCTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCCGTTGATCATTCTTTAGCAGCCATGGTTTTAAGCGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCGCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGACATTATGGCTAGTCGTTTGTTAGAATTGGCAGGCTATAGGC
TTAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTGCGTAAGGCAATTGAGCTAAATGCCGGCTATAGTAAGGAA
ACCATTAAGGCGATTCATGAGTTGCGTAAACCTAAAAAGACGAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACTAGAGACCTGACAGAGATGGCAAGACAGGGCTTGTTAGAGCCAGTTATCG
GACGAGAAAAAGAAGTGTCACGTATGGTTCAGGTGCTCTGTCGTAAGACTAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTTGGAAAAACTGCTCTAGCTTATGGCTTGGCACAGCGTATTGCAAACGGCGTGATTCCTTATGAATTACAGGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGCAAAATCATCTTGTTTGTCGATGAGTTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCTCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACAATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGCTACTTGACGAGTAAGCGGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTACAAAGCATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTACTTG
ATGGTGATATGGTCAAGGTATCCGCTATTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGGGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGTTAGCTTTTGATATTGCTTGA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• AAA lid domain (AAA_lid_9) (374-453)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.416	100	0.744
clpC	Streptococcus thermophilus LMD-9	72.181	100	0.724
clpC	Streptococcus thermophilus LMG 18311	71.936	100	0.722
clpC	Streptococcus pneumoniae Rx1	65.725	100	0.658
clpC	Streptococcus pneumoniae D39	65.725	100	0.658
clpC	Streptococcus pneumoniae TIGR4	65.602	100	0.657
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.865	100	0.503
clpC	Bacillus subtilis subsp. subtilis str. 168	43.952	100	0.451