Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   SMULJ23_RS08585 Genome accession   NC_017768
Coordinates   1771979..1772890 (-) Length   303 a.a.
NCBI ID   WP_014678236.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766979..1777890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS08575 (SMULJ23_1680) ulaG 1768295..1769386 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  SMULJ23_RS08580 (SMULJ23_1681) - 1769965..1771629 (-) 1665 WP_014678235.1 transcription antiterminator -
  SMULJ23_RS08585 (SMULJ23_1682) comB/nlmE 1771979..1772890 (-) 912 WP_014678236.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  SMULJ23_RS08590 (SMULJ23_1683) comA/nlmT 1772904..1775186 (-) 2283 WP_002263523.1 peptide cleavage/export ABC transporter Regulator
  SMULJ23_RS08595 (SMULJ23_1686) - 1776443..1776721 (-) 279 WP_014678238.1 hypothetical protein -
  SMULJ23_RS08600 (SMULJ23_1687) - 1776959..1777168 (-) 210 WP_002292070.1 hypothetical protein -
  SMULJ23_RS10260 (SMULJ23_1688) - 1777642..1777803 (-) 162 WP_162470319.1 hypothetical protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 34515.94 Da        Isoelectric Point: 10.4422

>NTDB_id=50780 SMULJ23_RS08585 WP_014678236.1 1771979..1772890(-) (comB/nlmE) [Streptococcus mutans LJ23]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHRKSKKKKKSKSKKASKDKKKKSKNKKDEESSSDDENETKK
VSIFASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKI
NNVASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 912 bp        

>NTDB_id=50780 SMULJ23_RS08585 WP_014678236.1 1771979..1772890(-) (comB/nlmE) [Streptococcus mutans LJ23]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCGAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAAACAAGAAAGACGAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAG
GTTTCGATTTTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAAC
CGAGATTGCTCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTG
TTTCTATGAAAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATT
AACAATGTCGCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTGAAGGTTTCTAAGAA
AAATAGCAAACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCA
AAGATAAATTACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(163-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

98.35

100

0.984

Multiple sequence alignment