Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SANR_RS09690 Genome accession   NC_022239
Coordinates   2001910..2004264 (+) Length   784 a.a.
NCBI ID   WP_003034029.1    Uniprot ID   I0SK11
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996910..2009264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS09665 (SANR_1876) - 1999082..1999630 (-) 549 WP_003034014.1 CvpA family protein -
  SANR_RS09670 (SANR_1877) - 1999627..1999932 (-) 306 WP_003034036.1 hypothetical protein -
  SANR_RS09675 (SANR_1878) rnhC 2000018..2000908 (+) 891 WP_003034026.1 ribonuclease HIII -
  SANR_RS09680 (SANR_1879) lepB 2000912..2001526 (+) 615 WP_003034019.1 signal peptidase I -
  SANR_RS09690 (SANR_1880) recD/recD2/recDB 2001910..2004264 (+) 2355 WP_003034029.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SANR_RS09700 (SANR_1881) - 2004310..2005504 (-) 1195 Protein_1909 ISL3 family transposase -
  SANR_RS09705 (SANR_1882) - 2005817..2007018 (+) 1202 Protein_1910 IS110 family transposase -
  SANR_RS09710 (SANR_1884) - 2007340..2008030 (-) 691 Protein_1911 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88499.84 Da        Isoelectric Point: 4.6542

>NTDB_id=50780 SANR_RS09690 WP_003034029.1 2001910..2004264(+) (recD/recD2/recDB) [Streptococcus anginosus C238]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFIMKLRQNYGTERILAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSIEKGDTYLEAK
ELLEGTIELLESSRQIELDPISVADELAYLIEEDKVQNVDTKIFENSLFFAEEGIRSSLLRILEKGKQNKFEPKKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDSDQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPPDFIEKKADRSYFEAHSEHIPKMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQIIFEATDCQYRQGDKVIHLVNDAENNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIIYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLNEEKVIHTSVDNLETTVEKYILTEENFLKINPMIGITDEDIQNVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=50780 SANR_RS09690 WP_003034029.1 2001910..2004264(+) (recD/recD2/recDB) [Streptococcus anginosus C238]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACAGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACGGCACAAAAAATCGT
GGATCTCTATGGCGATAACACGATTGATAAGGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGGCTTTCTGCCA
AAAATCGCGAAGCTTTTATTATGAAACTAAGACAGAACTACGGTACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATAGAAAAAGGCGACACCTATCTTGAAGCTAAG
GAATTGCTAGAGGGCACGATTGAGCTCCTCGAAAGTTCTCGTCAGATTGAGTTAGACCCAATTTCTGTTGCGGATGAGCT
GGCATATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAATAGTCTCTTTTTTGCCGAAGAAG
GGATTCGCAGCAGTCTCCTACGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGAAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGCAAATCTCAAGATTTGCCTATTCTTCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATTT
CATCAAACACCAAACTTCTCATTGTCGGAGATTCCGACCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAAACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCATAGTG
AGCATATTCCGAAGATGATTGAGCGCATCGTAGAGGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAAATCATTTTTGAAGCAACGGATTGTCAATATCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAACA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCCAAATATACTGATTCAAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTATTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTCCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTGCTCAATGAAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAATGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

AAA domain (AAA_30)

(333-531)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SK11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.633

95.281

0.397

Multiple sequence alignment