Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I2438_RS09095 Genome accession   NZ_CP065190
Coordinates   1840352..1842328 (-) Length   658 a.a.
NCBI ID   WP_231146479.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ36     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835352..1847328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2438_RS09075 (HCFMJIKG_01803) amiF 1835868..1836791 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2438_RS09080 (HCFMJIKG_01804) amiE 1836784..1837854 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2438_RS09085 (HCFMJIKG_01805) amiD 1837863..1838789 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  I2438_RS09090 (HCFMJIKG_01806) amiC 1838789..1840288 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  I2438_RS09095 (HCFMJIKG_01807) amiA3 1840352..1842328 (-) 1977 WP_231146479.1 peptide ABC transporter substrate-binding protein Regulator
  I2438_RS09100 (HCFMJIKG_01808) pbp3 1842636..1843874 (+) 1239 WP_021321130.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2438_RS09105 (HCFMJIKG_01809) pbp3 1844198..1845433 (+) 1236 WP_021321131.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2438_RS09110 (HCFMJIKG_01810) - 1845516..1846697 (+) 1182 WP_165627948.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72746.14 Da        Isoelectric Point: 5.2379

>NTDB_id=507790 I2438_RS09095 WP_231146479.1 1840352..1842328(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNEITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTYYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGDKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQGETY
QNISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGIKGDTYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=507790 I2438_RS09095 WP_231146479.1 1840352..1842328(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGAGATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCACTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATTGAGCTTGTCAAAAACGAAAACTATTGGGAT
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACTTATTATGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCACACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAAATTGGCGACAAAAACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAGAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGCGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGGGAGAGACCTAT
CAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGATTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTTTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATCTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTATTAAGGGTGATACCT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.061

100

0.562
  amiA Streptococcus salivarius strain HSISS4

55.994

100

0.561
  amiA3 Streptococcus thermophilus LMD-9

55.909

100

0.561