Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SMULJ23_RS07990 Genome accession   NC_017768
Coordinates   1651688..1652722 (-) Length   344 a.a.
NCBI ID   WP_002267541.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1646688..1657722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS07955 (SMULJ23_1559) - 1647601..1647903 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  SMULJ23_RS07960 (SMULJ23_1560) - 1647896..1648192 (-) 297 WP_002263922.1 YlxR family protein -
  SMULJ23_RS07965 (SMULJ23_1561) nusA 1648210..1649403 (-) 1194 WP_002280995.1 transcription termination factor NusA -
  SMULJ23_RS07970 (SMULJ23_1562) rimP 1649439..1649930 (-) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMULJ23_RS07980 (SMULJ23_1563) trmB 1650202..1650837 (-) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMULJ23_RS07985 (SMULJ23_1564) - 1650847..1651629 (-) 783 WP_014678196.1 phosphotransferase family protein -
  SMULJ23_RS07990 (SMULJ23_1565) pptB 1651688..1652722 (-) 1035 WP_002267541.1 ABC transporter permease Regulator
  SMULJ23_RS07995 (SMULJ23_1566) pptA 1652725..1653450 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMULJ23_RS08000 (SMULJ23_1567) - 1653515..1653934 (+) 420 WP_002262609.1 HIT family protein -
  SMULJ23_RS08005 (SMULJ23_1568) - 1653931..1654215 (+) 285 WP_002262610.1 hypothetical protein -
  SMULJ23_RS08010 (SMULJ23_1569) brpA 1654388..1655608 (-) 1221 WP_014678197.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMULJ23_RS08015 (SMULJ23_1570) tsaE 1655939..1656382 (-) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40598.06 Da        Isoelectric Point: 10.6270

>NTDB_id=50777 SMULJ23_RS07990 WP_002267541.1 1651688..1652722(-) (pptB) [Streptococcus mutans LJ23]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=50777 SMULJ23_RS07990 WP_002267541.1 1651688..1652722(-) (pptB) [Streptococcus mutans LJ23]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCCATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAGGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515

  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509


Multiple sequence alignment