Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   SMULJ23_RS07295 Genome accession   NC_017768
Coordinates   1508565..1510826 (+) Length   753 a.a.
NCBI ID   WP_002266431.1    Uniprot ID   A0AAX1JZI0
Organism   Streptococcus mutans LJ23     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1503565..1515826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS07270 (SMULJ23_1423) - 1504718..1505194 (-) 477 WP_002263564.1 ferrous iron transport protein A -
  SMULJ23_RS07275 (SMULJ23_1424) - 1505387..1506121 (-) 735 WP_002264702.1 amino acid ABC transporter ATP-binding protein -
  SMULJ23_RS07280 (SMULJ23_1425) - 1506121..1506807 (-) 687 WP_002263566.1 amino acid ABC transporter permease -
  SMULJ23_RS07285 (SMULJ23_1426) - 1507021..1507251 (-) 231 WP_002263567.1 DUF1797 family protein -
  SMULJ23_RS07290 (SMULJ23_1427) argF 1507328..1508308 (-) 981 WP_014678158.1 ornithine carbamoyltransferase -
  SMULJ23_RS07295 (SMULJ23_1428) clpE 1508565..1510826 (+) 2262 WP_002266431.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SMULJ23_RS07300 (SMULJ23_1429) - 1510937..1511392 (+) 456 WP_002263570.1 NUDIX hydrolase -
  SMULJ23_RS07305 (SMULJ23_1430) - 1511459..1511761 (+) 303 WP_002263571.1 DUF1827 family protein -
  SMULJ23_RS07315 (SMULJ23_1431) ileS 1512534..1515326 (-) 2793 WP_002274954.1 isoleucine--tRNA ligase -

Sequence


Protein


Download         Length: 753 a.a.        Molecular weight: 83747.88 Da        Isoelectric Point: 5.0580

>NTDB_id=50771 SMULJ23_RS07295 WP_002266431.1 1508565..1510826(+) (clpE) [Streptococcus mutans LJ23]
MLCQNCKLNEATIHLYANVNGQQKQIDLCQNCYQIMKTDPENGPLNHLSQQNSSSINPFFDDFFGDLNNFRAFNNQDLPN
TPPTQAGGGNGNGGNNRRPGGPQQQASQKPNGLLEEFGINLTDIARKGEIDPVIGRDEEITRVIEILNRRTKNNPVLIGE
PGVGKTAVVEGLAQKIVDGDVPQKLHGKNVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRQRQDVILFIDEIHEIVGAGS
AGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVAETITILKGIQPKYEDYHHVKYTDE
AIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDHRLIEAENLKAQATRDEDYEKAAYFRDQIAKYKE
MQSAKLDKENTPVITEKNIEVIVEQKTNIPVGELKEKEQSQLIHLADDLKTRVIGQDAAVDKIAKAIRRNRVGLGTPNRP
IGSFLFVGPTGVGKTELSKQLAIELFGSEDSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLD
EVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEANVGFGASREGRTNSVLGELGNFFSPEFMNR
FDGIIEFQALSKDNLLQIVSLMLDDVNQRLAVNAIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQEHIEDAITDFYLEH
PDQKELKAIMTSNGKIVIRASNKVETVTKATSD

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=50771 SMULJ23_RS07295 WP_002266431.1 1508565..1510826(+) (clpE) [Streptococcus mutans LJ23]
ATGCTCTGTCAAAATTGTAAATTAAATGAAGCGACTATTCATCTATATGCTAATGTTAATGGTCAGCAAAAGCAGATTGA
CCTTTGTCAAAATTGTTATCAAATTATGAAAACAGATCCTGAAAATGGACCTTTAAATCATCTTTCGCAACAAAATTCGT
CATCCATCAATCCTTTCTTTGATGATTTCTTTGGCGATTTGAATAATTTTCGTGCCTTTAATAATCAAGATCTGCCAAAC
ACACCGCCAACACAAGCTGGCGGCGGCAATGGCAACGGAGGCAATAATCGCCGTCCCGGCGGACCTCAGCAACAGGCCTC
CCAAAAGCCAAATGGGTTGCTTGAAGAGTTTGGTATTAATTTAACAGATATTGCGCGCAAGGGTGAAATTGATCCTGTTA
TTGGTCGTGATGAAGAAATCACAAGGGTTATCGAAATTCTCAACCGTCGCACAAAGAATAATCCTGTTCTTATTGGAGAA
CCGGGTGTCGGTAAAACTGCTGTTGTCGAAGGACTGGCGCAAAAAATTGTTGATGGTGATGTTCCACAAAAATTACATGG
AAAAAATGTCATTCGTCTGGACGTCGTCAGCCTTGTTCAAGGTACTGGTATTCGAGGCCAATTTGAAGAACGGATGCAAA
AGCTAATGGAAGAAATCCGTCAACGTCAAGATGTTATTCTTTTCATTGATGAAATTCATGAAATTGTTGGTGCTGGTTCT
GCTGGCGATGGCAATATGGATGCCGGAAATATTTTAAAACCCGCTTTGGCACGCGGTGAGCTTCAACTTGTTGGTGCTAC
AACACTCAATGAATATCGGATTATTGAAAAAGATGCCGCTTTGGAACGTCGAATGCAACCCGTAAAAGTTGATGAACCTA
GTGTTGCAGAAACCATAACGATTCTTAAAGGTATTCAGCCCAAATATGAAGATTACCATCATGTAAAGTATACAGATGAA
GCGATTGAAGCTGCTGCAAATCTTTCAAATCGTTACATTCAGGATCGTTTTTTACCTGATAAGGCTATTGATCTTCTAGA
TGAAGCTGGCTCTAAAATGAATTTAACACTTAACTTTGTAGATCCTAAAGAAATTGATCACCGCTTGATTGAAGCCGAAA
ATCTAAAAGCTCAAGCAACCCGTGATGAGGATTATGAAAAAGCAGCTTACTTCCGTGATCAAATTGCCAAATACAAGGAA
ATGCAATCCGCTAAACTTGATAAGGAGAATACTCCTGTTATTACAGAAAAAAATATTGAAGTAATTGTCGAACAAAAGAC
CAATATTCCTGTTGGTGAATTAAAAGAAAAGGAACAATCACAATTAATTCATCTCGCTGACGATCTTAAAACGCGTGTTA
TTGGACAGGATGCTGCTGTTGATAAAATTGCTAAAGCTATTCGCCGCAATCGTGTTGGACTAGGCACTCCAAATCGGCCA
ATTGGTTCTTTCCTTTTTGTCGGCCCTACTGGTGTTGGTAAAACGGAACTCTCTAAACAATTAGCTATTGAGCTTTTTGG
TTCTGAAGATAGTATGATTCGTTTCGATATGAGTGAATACATGGAAAAACATGCTGTGGCTAAACTTGTTGGTGCACCTC
CGGGATATGTCGGTTATGAAGAAGCTGGTCAGTTAACCGAAAAAGTTCGTCGCAACCCTTATTCATTGATCTTACTCGAT
GAAGTTGAAAAAGCTCACCCAGATGTCATGCATATGTTCTTACAAGTGCTTGATGATGGTCGTCTAACGGATGGACAAGG
ACGCACTGTCAGCTTTAAGGATACTATTATTATCATGACCTCAAATGCTGGTACAGGGAAATCTGAAGCTAATGTTGGTT
TTGGTGCCAGTCGAGAAGGCCGTACTAATTCTGTTCTAGGCGAATTGGGTAACTTCTTTAGCCCTGAATTTATGAACCGT
TTTGATGGTATCATCGAATTTCAGGCTTTAAGCAAGGATAATCTTCTTCAAATTGTTTCTCTCATGCTGGATGACGTTAA
TCAACGTTTAGCTGTTAATGCTATTCACCTTGATGTAACTGATAAAGTTAAAGAAAAATTGGTTGATCTCGGTTATGATC
CTAAAATGGGAGCAAGACCGCTGCGTCGTACTATCCAAGAACATATTGAAGATGCTATTACGGATTTCTACTTAGAGCAT
CCTGATCAAAAAGAACTAAAAGCTATTATGACAAGCAACGGCAAAATTGTTATCAGGGCTTCTAACAAAGTCGAGACGGT
TACCAAAGCAACTTCAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

99.734

100

0.997

  clpE Streptococcus pneumoniae Rx1

82.62

99.336

0.821

  clpE Streptococcus pneumoniae D39

82.62

99.336

0.821

  clpE Streptococcus pneumoniae R6

82.62

99.336

0.821

  clpE Streptococcus pneumoniae TIGR4

82.62

99.336

0.821

  clpC Lactococcus lactis subsp. cremoris KW2

76.291

100

0.765

  clpC Bacillus subtilis subsp. subtilis str. 168

53.159

86.189

0.458

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48

86.321

0.414

  clpC Streptococcus pneumoniae Rx1

49.355

82.337

0.406

  clpC Streptococcus pneumoniae D39

49.355

82.337

0.406

  clpC Streptococcus pneumoniae TIGR4

49.194

82.337

0.405

  clpC Streptococcus thermophilus LMD-9

47.764

83.134

0.397

  clpC Streptococcus thermophilus LMG 18311

47.444

83.134

0.394

  clpC Streptococcus mutans UA159

47.011

82.205

0.386


Multiple sequence alignment