Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IRJ20_RS07865 Genome accession   NZ_CP065137
Coordinates   1544084..1544203 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539084..1549203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS07845 - 1539435..1539947 (+) 513 Protein_1540 bacteriocin biosynthesis protein AlbG -
  IRJ20_RS07850 - 1539953..1541330 (-) 1378 Protein_1541 YncE family protein -
  IRJ20_RS07855 - 1541369..1542724 (-) 1356 WP_033574380.1 YncE family protein -
  IRJ20_RS07860 rapF 1542955..1544100 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  IRJ20_RS07865 phrF 1544084..1544203 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IRJ20_RS07870 - 1544401..1544604 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  IRJ20_RS07875 - 1544618..1544821 (+) 204 WP_007407641.1 hypothetical protein -
  IRJ20_RS07880 - 1544856..1545041 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  IRJ20_RS07885 - 1545227..1545508 (+) 282 WP_007407643.1 hypothetical protein -
  IRJ20_RS07890 - 1545552..1546064 (+) 513 WP_031304384.1 stage II sporulation protein M -
  IRJ20_RS07895 - 1546655..1546873 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  IRJ20_RS07900 speB 1547041..1547913 (-) 873 WP_040238749.1 agmatinase -
  IRJ20_RS07905 speE 1547972..1548802 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=507226 IRJ20_RS07865 WP_015240778.1 1544084..1544203(+) (phrF) [Bacillus sp. A1(2020)]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=507226 IRJ20_RS07865 WP_015240778.1 1544084..1544203(+) (phrF) [Bacillus sp. A1(2020)]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462