Detailed information NTG0507225

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IRJ20_RS07860
• Genome accession: NZ_CP065137
• Coordinates: 1542955..1544100 (+)
• Length: 381 a.a.
• NCBI ID: WP_033574379.1
• Uniprot ID: -
• Organism: Bacillus sp. A1(2020)
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1537955..1549100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IRJ20_RS07840	-	1538853..1539281 (-)	429	WP_007407634.1	DUF1934 domain-containing protein	-
IRJ20_RS07845	-	1539435..1539947 (+)	513	Protein_1540	bacteriocin biosynthesis protein AlbG	-
IRJ20_RS07850	-	1539953..1541330 (-)	1378	Protein_1541	YncE family protein	-
IRJ20_RS07855	-	1541369..1542724 (-)	1356	WP_033574380.1	YncE family protein	-
IRJ20_RS07860	rapF	1542955..1544100 (+)	1146	WP_033574379.1	tetratricopeptide repeat protein	Regulator
IRJ20_RS07865	phrF	1544084..1544203 (+)	120	WP_015240778.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
IRJ20_RS07870	-	1544401..1544604 (+)	204	WP_007407640.1	helix-turn-helix transcriptional regulator	-
IRJ20_RS07875	-	1544618..1544821 (+)	204	WP_007407641.1	hypothetical protein	-
IRJ20_RS07880	-	1544856..1545041 (+)	186	WP_007407642.1	DUF4177 domain-containing protein	-
IRJ20_RS07885	-	1545227..1545508 (+)	282	WP_007407643.1	hypothetical protein	-
IRJ20_RS07890	-	1545552..1546064 (+)	513	WP_031304384.1	stage II sporulation protein M	-
IRJ20_RS07895	-	1546655..1546873 (-)	219	WP_003151056.1	LuxR C-terminal-related transcriptional regulator	-
IRJ20_RS07900	speB	1547041..1547913 (-)	873	WP_040238749.1	agmatinase	-
IRJ20_RS07905	speE	1547972..1548802 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45571.63 Da
• Isoelectric Point: 4.5769

>NTDB_id=507225 IRJ20_RS07860 WP_033574379.1 1542955..1544100(+) (rapF) [Bacillus sp. A1(2020)]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=507225 IRJ20_RS07860 WP_033574379.1 1542955..1544100(+) (rapF) [Bacillus sp. A1(2020)]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCTTATATATAGTGGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (189-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.478	100	0.785
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567