Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRJ20_RS04865 Genome accession   NZ_CP065137
Coordinates   927703..928347 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus sp. A1(2020)     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 922703..933347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS04830 - 923888..924319 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  IRJ20_RS04835 - 924319..924660 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  IRJ20_RS04840 - 924653..926134 (+) 1482 WP_015418103.1 Na+/H+ antiporter subunit D -
  IRJ20_RS04845 - 926140..926616 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  IRJ20_RS04850 - 926616..926900 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ20_RS04855 mnhG 926884..927258 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  IRJ20_RS04860 - 927298..927681 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  IRJ20_RS04865 comA 927703..928347 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  IRJ20_RS04870 comP 928428..930731 (-) 2304 WP_040238945.1 histidine kinase Regulator
  IRJ20_RS04875 comX 930751..930921 (-) 171 WP_003152048.1 competence pheromone ComX Regulator
  IRJ20_RS04880 comQ 930952..931869 (-) 918 WP_278189317.1 class 1 isoprenoid biosynthesis enzyme Regulator
  IRJ20_RS04885 degQ 932000..932140 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  IRJ20_RS04890 - 932603..932944 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=507211 IRJ20_RS04865 WP_003152052.1 927703..928347(-) (comA) [Bacillus sp. A1(2020)]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=507211 IRJ20_RS04865 WP_003152052.1 927703..928347(-) (comA) [Bacillus sp. A1(2020)]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864