Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KTR68_RS03515 Genome accession   NZ_CP077757
Coordinates   712700..713473 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain WHC07     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 707700..718473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR68_RS03480 - 707949..708719 (-) 771 WP_000473705.1 isoprenyl transferase -
  KTR68_RS03485 frr 709092..709646 (-) 555 WP_001280006.1 ribosome recycling factor -
  KTR68_RS03490 pyrH 709665..710387 (-) 723 WP_000057330.1 UMP kinase -
  KTR68_RS03495 tsf 710524..711405 (-) 882 WP_000201387.1 translation elongation factor Ts -
  KTR68_RS03500 - 711440..711553 (-) 114 WP_001789890.1 hypothetical protein -
  KTR68_RS03505 rpsB 711587..712354 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  KTR68_RS03510 - 712553..712657 (-) 105 WP_031774985.1 hypothetical protein -
  KTR68_RS03515 codY 712700..713473 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KTR68_RS03520 hslU 713498..714901 (-) 1404 WP_000379049.1 ATP-dependent protease ATPase subunit HslU -
  KTR68_RS03525 hslV 714967..715512 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  KTR68_RS03530 xerC 715509..716405 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  KTR68_RS03535 trmFO 716822..718129 (-) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=507213 KTR68_RS03515 WP_000055337.1 712700..713473(-) (codY) [Staphylococcus aureus strain WHC07]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=507213 KTR68_RS03515 WP_000055337.1 712700..713473(-) (codY) [Staphylococcus aureus strain WHC07]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428